HHsearch alignment of GI: 254780608 and MMDB domain: 3i1m_D_97-190
>3i1m_D (D:97-190) 30S ribosomal protein S4; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_D* 3e1a_R 3e1c_R 1vs5_D 3i1o_D 3i1q_D 3i1s_D 3i1z_D 3i21_D 2qal_D* 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D ...
Probab=97.90 E-value=7.3e-06 Score=56.60 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=44.4
Q ss_pred CHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEE-CCCCCCCCCCEEEEECCCC
Q ss_conf 6899999876788989999999849903887884-5112117998899935655
Q gi|254780608|r 20 RLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIPPVIN 72 (346)
Q Consensus 20 RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~v-k~~~~v~~GD~I~i~~~~~ 72 (346)
|||.+|-+.-=.-|+.+++++|..|.|+|||+++ +|++.|+.||+|.+.....
T Consensus 1 RLD~~l~r~gfa~S~~~ARqlI~hghv~VNg~~v~~ps~~vk~gD~i~i~~~~~ 54 (94)
T 3i1m_D 1 RLDNVVYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAK 54 (94)
T ss_dssp STTHHHHTTTSCSSHHHHHHHHHTTCEESSSSBCCSTTCCCCTTCCEEECSSSC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCEECCCEEEEEEEEEECCCCEEEECCCHH
T ss_conf 888886603125409999999985037608879976317705897788623232