HHsearch results for GI: 254780608 and protein with PDBid: 1k8w_A
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=96.67 E-value=0.00043 Score=44.47 Aligned_cols=70 Identities=19% Similarity=0.279 Sum_probs=47.4
Q ss_pred CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf 85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r 106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185 (346)
Q Consensus 106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A 185 (346)
+.||+||||+|+.+|- +...++...+ ..+.+-...||--.||||+++-+..+ + |...+.+ -.|+|.|
T Consensus 25 nG~l~i~Kp~g~tS~~-------~v~~~r~~l~--~kKvGH~GTLDP~AtGvL~v~~G~aT-K-l~~~~~~--~~K~Y~~ 91 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSND-------ALQKVKRIYN--ANRAGHTGALDPLATGMLPICLGEAT-K-FSQYLLD--SDKRYRV 91 (327)
T ss_dssp CEEEEEEECTTCCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGGGG-G-GTHHHHT--SCEEEEE
T ss_pred CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCEEEEEEEECHHH-H-HHHHHCC--CCCCEEE
T ss_conf 4699996899899899-------9999999858--98587786579856013999978787-4-8888778--9873289
Q ss_pred CCC
Q ss_conf 134
Q gi|254780608|r 186 LVW 188 (346)
Q Consensus 186 iv~ 188 (346)
.+.
T Consensus 92 ~~~ 94 (327)
T 1k8w_A 92 IAR 94 (327)
T ss_dssp EEE
T ss_pred EEE
T ss_conf 999