HHsearch results for GI: 254780608 and protein with PDBid: 1sgv_A

>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, protein structure initiative; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: b.122.1.1 d.265.1.2

Probab=96.69  E-value=0.00071  Score=43.12  Aligned_cols=71  Identities=23%  Similarity=0.347  Sum_probs=47.5

Q ss_pred             CCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCC
Q ss_conf             78568841765311223578533233201101111100133354453422240462123101222102333322111200
Q gi|254780608|r  105 DSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYW  184 (346)
Q Consensus       105 D~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~  184 (346)
                      +..|++||||.|+.+|.       +...+.....  ..+.+-.++||--.||+|+++-+..+  .+...|.+  -.|+|.
T Consensus         5 ~~G~l~i~KP~G~TS~~-------~v~~vk~~~~--~~KvGH~GTLDP~AsGvL~i~vG~aT--Kl~~~~~~--~~K~Y~   71 (316)
T 1sgv_A            5 GPGIVVIDKPAGMTSHD-------VVGRCRRIFA--TRRVGHAGTLDPMATGVLVIGIERAT--KILGLLTA--APKSYA   71 (316)
T ss_dssp             CSEEEEEEECTTCCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGGGG--GGGGGTTT--SCEEEE
T ss_pred             CCEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHHC--CCEEEE
T ss_conf             98899997799999899-------9999999858--78456487789756334999978788--47799851--864899


Q ss_pred             CCCC
Q ss_conf             0134
Q gi|254780608|r  185 SLVW  188 (346)
Q Consensus       185 Aiv~  188 (346)
                      |.+.
T Consensus        72 ~~~~   75 (316)
T 1sgv_A           72 ATIR   75 (316)
T ss_dssp             EEEE
T ss_pred             EEEE
T ss_conf             9999