HHsearch results for GI: 254780608 and protein with PDBid: 2i82_A
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=100.00 E-value=0 Score=384.73 Aligned_cols=206 Identities=32% Similarity=0.442 Sum_probs=164.4
Q ss_pred CCCEEEEECCCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCC
Q ss_conf 54307861785688417653112235785332332011011111001333544534222404621231012221023333
Q gi|254780608|r 97 LKSILLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRM 176 (346)
Q Consensus 97 ~~~~IiyED~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~ 176 (346)
.+++||||||+|+|||||+||+|||+.+.... ..+ ..........+++|||||++||||||+|||+++++.|+++|++
T Consensus 10 p~l~Ilyed~~~lvvnKP~gl~~~~~~~~~~~-~~~-~~~~~~~~~~~~~vhRLD~~TSGlvl~Ak~~~~~~~l~~~~~~ 87 (217)
T 2i82_A 10 PWLVILYQDDHIMVVNKPSGLLSVPGRLEEHK-DSV-MTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFRE 87 (217)
T ss_dssp SSCCEEEECSSEEEEEECTTSBSSCCSSGGGC-CBH-HHHHHHHCTTCEESSCCCTTCEEEEEEESSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCEEEEECCCCCCCCCCCCCCCH-HHH-HHHHHHCCCCCCCCCCCCCCCEEEEEEEECHHHHHHHHHHHHC
T ss_conf 99529997899999999999825699887760-489-9987503786431545787521479995020557899999865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHH
Q ss_conf 22111200013456541000000012234655432111335555555303430101343202442045786123789999
Q gi|254780608|r 177 RRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLR 256 (346)
Q Consensus 177 ~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIR 256 (346)
+.|.|+|+|+|.|.+....+.+..++..+...... .......+++.+.+.+.+... ...+||++|+|.||||||||
T Consensus 88 ~~v~K~Y~a~v~G~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~sl~~~~~~TGR~HQIR 163 (217)
T 2i82_A 88 REPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPK---QKVCYETGKPAQTEYEVVEYA-ADNTARVVLKPITGRSHQLR 163 (217)
T ss_dssp TCSEEEEEEEEESCCSSSEEEEECCEEECGGGTTC---EEECTTTCBCCEEEEEEEEEE-TTTEEEEEEEESSCCTTHHH
T ss_pred CEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCC---EEEEECCCCCCCEEEEEEEEE-CCCCEEEEEEECCCCCHHHH
T ss_conf 93515997875143356643697545201456741---356503786331589998751-13314779998989847999
Q ss_pred HHHHHCCCCEECCCCCCCCCCCHHCCCCCCCHHHHHHHHEEECCCCC-EEEEECCCC
Q ss_conf 99996398000464446652210001344624131100043758896-499983997
Q gi|254780608|r 257 VHALHMGCPIVGDHKYCANFKGNFTSPIQNKLYLHARYMDLPHPEGG-RLQITAPLP 312 (346)
Q Consensus 257 vhl~~~g~PivGD~~Yg~~~~~~~~~~~~~r~~LHa~~l~f~hp~~~-~~~~~aplP 312 (346)
+|||++|||||||.+||+... .....|++|||++|+|+||.++ +++|+||+|
T Consensus 164 vHla~ig~PIvGD~~Yg~~~~----~~~~~r~~LHa~~l~f~~P~t~~~~~~~aP~~ 216 (217)
T 2i82_A 164 VHMLALGHPILGDRFYASPEA----RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 216 (217)
T ss_dssp HHHHHTTCCBTTCTTTSCHHH----HHTCSSCCEEEEEEEEECTTTCCEEEEECCCC
T ss_pred HHHHHCCCCCCCCCCCCCHHH----CCCCCCHHHHCCCCEEECCCCCCEEEEECCCC
T ss_conf 999976982617767688546----36996744752678879989998899985899