HHsearch results for GI: 254780608 and protein with PDBid: 2oml_A
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=100.00 E-value=1.2e-34 Score=237.07 Aligned_cols=159 Identities=23% Similarity=0.279 Sum_probs=107.0
Q ss_pred ECCCEEEECCCCCCEEECCCCC-CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCC
Q ss_conf 1785688417653112235785-332332011011111001333544534222404621231012221023333221112
Q gi|254780608|r 104 EDSKIYVFNKPAGISVQGGSGI-AYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKI 182 (346)
Q Consensus 104 ED~~livinKPaGl~vhp~~g~-~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~ 182 (346)
++..+||+|||+|++||+.... ..++.+++ . ..+.++|||||++||||||||++..++..|.. ..+.+.|+
T Consensus 9 ~~~~~iivnKP~G~~~~~~~~~~~~~l~~~l----~--~~~~~~vhRLDr~TSGLll~a~~~~~~~~l~~--~~~~i~K~ 80 (189)
T 2oml_A 9 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFI----P--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ--PGKRTGKI 80 (189)
T ss_dssp CCCCEEEEEECTTBCSCSSCCTTCBCGGGTC----C--CSSCEESSCCCTTCEEEEEEESCHHHHHHHHS--TTSCCCEE
T ss_pred CCCEEEEEECCCCCEECCCCCCCCCCHHHHC----C--CCCCEECCCCCCCCCCCEEEECCCHHHHHHCC--CCCCEEEE
T ss_conf 9988999999998383177999997688966----7--24753763458777880898337303555425--76536789
Q ss_pred CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf 000134565410000000--122346554321113355555553034301013432024420457861237899999999
Q gi|254780608|r 183 YWSLVWGIPKNKKECIAN--WLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHAL 260 (346)
Q Consensus 183 Y~Aiv~G~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl~ 260 (346)
|+|+|.|.+..+....-. ........ ........+......+.+.+..... +..+|+++|.|.||||||||+||+
T Consensus 81 Y~a~v~g~~~~~~~~~l~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~l~v~l~tGR~HQIR~hl~ 157 (189)
T 2oml_A 81 YYVQVEGIPTQDALEALRNGVTLNDGPT--LPAGAELVDEPAWLWPRNPPIRERK-SIPTSWLKITLYEGRNRQVRRMTA 157 (189)
T ss_dssp EEEEEESCCCHHHHHHHHHCCEETTEEC--CCCEEEEECCCTTCCCCSSCCC-CT-TSCEEEEEEEESCCCTTHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHCCCCCCCCCC--CCEEEEEECCCCCCCEEEEEEEEEE-CCCCEEEEEEECCCCHHHHHHHHH
T ss_conf 9999953799899999864983468622--3206899535665220466899862-365148999951587499999999
Q ss_pred HCCCCEECCCCCC
Q ss_conf 6398000464446
Q gi|254780608|r 261 HMGCPIVGDHKYC 273 (346)
Q Consensus 261 ~~g~PivGD~~Yg 273 (346)
++||||+++.+|.
T Consensus 158 ~iG~pI~~l~R~~ 170 (189)
T 2oml_A 158 HVGFPTLRLIRYA 170 (189)
T ss_dssp HTTCCEEEEEEEE
T ss_pred HCCCEEEEEEEEE
T ss_conf 8699797889999