HHsearch results for GI: 254780608 and protein with PDBid: 2oml_A

>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=100.00  E-value=1.2e-34  Score=237.07  Aligned_cols=159  Identities=23%  Similarity=0.279  Sum_probs=107.0

Q ss_pred             ECCCEEEECCCCCCEEECCCCC-CCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCC
Q ss_conf             1785688417653112235785-332332011011111001333544534222404621231012221023333221112
Q gi|254780608|r  104 EDSKIYVFNKPAGISVQGGSGI-AYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKI  182 (346)
Q Consensus       104 ED~~livinKPaGl~vhp~~g~-~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~  182 (346)
                      ++..+||+|||+|++||+.... ..++.+++    .  ..+.++|||||++||||||||++..++..|..  ..+.+.|+
T Consensus         9 ~~~~~iivnKP~G~~~~~~~~~~~~~l~~~l----~--~~~~~~vhRLDr~TSGLll~a~~~~~~~~l~~--~~~~i~K~   80 (189)
T 2oml_A            9 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFI----P--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ--PGKRTGKI   80 (189)
T ss_dssp             CCCCEEEEEECTTBCSCSSCCTTCBCGGGTC----C--CSSCEESSCCCTTCEEEEEEESCHHHHHHHHS--TTSCCCEE
T ss_pred             CCCEEEEEECCCCCEECCCCCCCCCCHHHHC----C--CCCCEECCCCCCCCCCCEEEECCCHHHHHHCC--CCCCEEEE
T ss_conf             9988999999998383177999997688966----7--24753763458777880898337303555425--76536789


Q ss_pred             CCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHHHHHHHHHHH
Q ss_conf             000134565410000000--122346554321113355555553034301013432024420457861237899999999
Q gi|254780608|r  183 YWSLVWGIPKNKKECIAN--WLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHAL  260 (346)
Q Consensus       183 Y~Aiv~G~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR~HQIRvhl~  260 (346)
                      |+|+|.|.+..+....-.  ........  ........+......+.+.+..... +..+|+++|.|.||||||||+||+
T Consensus        81 Y~a~v~g~~~~~~~~~l~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~l~v~l~tGR~HQIR~hl~  157 (189)
T 2oml_A           81 YYVQVEGIPTQDALEALRNGVTLNDGPT--LPAGAELVDEPAWLWPRNPPIRERK-SIPTSWLKITLYEGRNRQVRRMTA  157 (189)
T ss_dssp             EEEEEESCCCHHHHHHHHHCCEETTEEC--CCCEEEEECCCTTCCCCSSCCC-CT-TSCEEEEEEEESCCCTTHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHHCCCCCCCCCC--CCEEEEEECCCCCCCEEEEEEEEEE-CCCCEEEEEEECCCCHHHHHHHHH
T ss_conf             9999953799899999864983468622--3206899535665220466899862-365148999951587499999999


Q ss_pred             HCCCCEECCCCCC
Q ss_conf             6398000464446
Q gi|254780608|r  261 HMGCPIVGDHKYC  273 (346)
Q Consensus       261 ~~g~PivGD~~Yg  273 (346)
                      ++||||+++.+|.
T Consensus       158 ~iG~pI~~l~R~~  170 (189)
T 2oml_A          158 HVGFPTLRLIRYA  170 (189)
T ss_dssp             HTTCCEEEEEEEE
T ss_pred             HCCCEEEEEEEEE
T ss_conf             8699797889999