HHSEARCH alignment of GI: 254780608 and SCOP domain: d1k8wa5

Alignment
>d1k8wa5 d.265.1.2 (A:9-250) Pseudouridine synthase II TruB {Escherichia coli [TaxId: 562]}
Probab=96.85  E-value=0.00016  Score=45.64  Aligned_cols=70  Identities=19%  Similarity=0.253  Sum_probs=46.3

Q ss_pred             CCEEEECCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHCCCCCCCCCCCCCCC
Q ss_conf             85688417653112235785332332011011111001333544534222404621231012221023333221112000
Q gi|254780608|r  106 SKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS  185 (346)
Q Consensus       106 ~~livinKPaGl~vhp~~g~~~~~~~~l~~~~~~~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~~~f~~~~v~K~Y~A  185 (346)
                      +.|++||||+|+.+|-       +...+....+  ..+.+-...||--.||+|+++-++ +.+.+.. |.  .-.|+|.|
T Consensus         4 ~G~l~v~KP~g~tS~~-------vv~~~k~~l~--~kKvGh~GTLDP~AsGvL~i~ig~-aTK~~~~-~~--~~~K~Y~~   70 (242)
T d1k8wa5           4 NGVLLLDKPQGMSSND-------ALQKVKRIYN--ANRAGHTGALDPLATGMLPICLGE-ATKFSQY-LL--DSDKRYRV   70 (242)
T ss_dssp             CEEEEEEECTTCCHHH-------HHHHHHHHTT--CSCEEESSCCCTTCEEEEEEEEGG-GGGGTHH-HH--TSCEEEEE
T ss_pred             CEEEEEECCCCCCHHH-------HHHHHHHHHC--CCCCCCCCCCCCCCCCEEEEEECH-HHHHHHH-HH--HHHHEEEE
T ss_conf             6799996699899899-------9999999828--775784774798661107999763-3444355-43--21131159


Q ss_pred             CCC
Q ss_conf             134
Q gi|254780608|r  186 LVW  188 (346)
Q Consensus       186 iv~  188 (346)
                      .+.
T Consensus        71 ~i~   73 (242)
T d1k8wa5          71 IAR   73 (242)
T ss_dssp             EEE
T ss_pred             EEE
T ss_conf             999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase II TruB
domain: Pseudouridine synthase II TruB
species: Escherichia coli [TaxId: 562]