HHSEARCH alignment of GI: 254780608 and SCOP domain: d1kska3

Alignment

Probab=98.55  E-value=4.2e-08  Score=68.28  Aligned_cols=49  Identities=20%  Similarity=0.284  Sum_probs=45.7

Q ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEE-CCCCCCCCCCEEEEE
Q ss_conf             66899999876788989999999849903887884-511211799889993
Q gi|254780608|r   19 MRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIP   68 (346)
Q Consensus        19 ~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~v-k~~~~v~~GD~I~i~   68 (346)
                      ||||+||+... .+||++++++|++|.|+|||+.+ ++++.|.++|.|.+.
T Consensus         1 mRLdk~l~~~~-~~SR~~a~~lI~~g~V~Vng~~v~~~~~~V~~~d~I~~d   50 (59)
T d1kska3           1 MRLDKFIAQQL-GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYD   50 (59)
T ss_dssp             EEHHHHHHHHH-TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEET
T ss_pred             CCHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEEEECCCCCCCCCCEEEEC
T ss_conf             94899998858-879999999997691898999962598694999999999

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Pseudouridine synthase RsuA N-terminal domain
domain: Pseudouridine synthase RsuA N-terminal domain
species: Escherichia coli [TaxId: 562]