Probab=100.00 E-value=0 Score=433.87 Aligned_cols=228 Identities=27% Similarity=0.433 Sum_probs=181.7
Q ss_pred CCCCCEEEEECCCEEEECCCCCCEEECCCCCCC-CCCCCHHHCCCC--CCCCCCCCCCCCCCCCCEEEEECCCCHHHHHC
Q ss_conf 345430786178568841765311223578533-233201101111--10013335445342224046212310122210
Q gi|254780608|r 95 DFLKSILLYEDSKIYVFNKPAGISVQGGSGIAY-HIDGFLKSWVDS--KGQKPRLTHRLDQETSGILVVARTRAAAQHLT 171 (346)
Q Consensus 95 ~~~~~~IiyED~~livinKPaGl~vhp~~g~~~-~~~~~l~~~~~~--~~~~~~lVHRLDr~TSGlll~AK~~~a~~~l~ 171 (346)
+.++++|||||++|||||||+||+|||+++... ++.+.+...... ....+++|||||++||||||||||+.+++.|+
T Consensus 4 ~~~~l~IlyeD~~~ivvnKP~gl~~hp~~~~~~~t~~~~l~~~~~~~~~~~~~~~vHRLDr~TSGlll~Ak~~~a~~~l~ 83 (250)
T d1v9fa_ 4 QDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLV 83 (250)
T ss_dssp CCCCCCEEEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGGGGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHH
T ss_pred CCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHH
T ss_conf 88997789978999999999998780799999845999999973650488742577514888765178851527888632
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEECHHH
Q ss_conf 23333221112000134565410000000122346554321113355555553034301013432024420457861237
Q gi|254780608|r 172 ESFRMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQPHTGR 251 (346)
Q Consensus 172 ~~f~~~~v~K~Y~Aiv~G~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~a~T~~~vl~~~~~~~slv~~~l~TGR 251 (346)
++|+++.|.|+|+|+|.|.+.. .+.++.++....... .. ....++||.|+|+|++++..+ .+||++|+|.|||
T Consensus 84 ~~f~~~~v~K~Y~a~~~g~~~~-~~~~~~~~~~~~~~~-~~----~~~~~~gk~a~T~~~~l~~~~-~~slv~~~~~TGR 156 (250)
T d1v9fa_ 84 ESLQRREITREYEAVAIGHMTA-GGTVDEPISRHPTKR-TH----MAVHPMGKPAVTHYRIMEHFR-VHTRLRLRLETGR 156 (250)
T ss_dssp HHHHTTCSEEEEEEEEESCCCC-CEEEECCEEECSSCT-TC----EEECTTSBCCEEEEEEEEECS-SEEEEEEEESCCC
T ss_pred HHHCCCEEEEEEEEEECCCCCC-CCCCCCCCCCCCCCC-CE----EEECCCCEECCCCCHHHHCCC-CCEEEEEEECCCC
T ss_conf 3304545767744321135464-566235533577666-30----687789834441011344056-7426887863663
Q ss_pred HHHHHHHHHHCCCCEECCCCCCCCCCCHH--------CCCCCCCHHHHHHHHEEECCCCC-EEEEECCCCHHHHHHHHHH
Q ss_conf 89999999963980004644466522100--------01344624131100043758896-4999839978999999980
Q gi|254780608|r 252 THQLRVHALHMGCPIVGDHKYCANFKGNF--------TSPIQNKLYLHARYMDLPHPEGG-RLQITAPLPAHMVKTWDSL 322 (346)
Q Consensus 252 ~HQIRvhl~~~g~PivGD~~Yg~~~~~~~--------~~~~~~r~~LHa~~l~f~hp~~~-~~~~~aplP~~f~~~l~~l 322 (346)
|||||+||+++||||+||.+||+...... ......||+|||++|+|.||.++ +++|+||+|+||.++|+.|
T Consensus 157 ~HQIRvHla~lG~PIlGD~~YG~~~~~~~~~~~~~~~~~~~~~r~~LHA~~L~f~hP~t~~~~~~~aplP~df~~~l~~L 236 (250)
T d1v9fa_ 157 THQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVM 236 (250)
T ss_dssp TTHHHHHHHHTTCCBTTCTTTTCCCCCCTTCCHHHHHHHHHCCSCSEEEEEEEEECTTTCCEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHH
T ss_conf 27999999985983001115762113544455878887742526456407115326899986999807909999999997
Q ss_pred CCCCCCC
Q ss_conf 8987520
Q gi|254780608|r 323 GFKYDRN 329 (346)
Q Consensus 323 ~~~~d~~ 329 (346)
++.+++.
T Consensus 237 ~~~~~~~ 243 (250)
T d1v9fa_ 237 RADFEEH 243 (250)
T ss_dssp HHHHHHH
T ss_pred HHHHHHC
T ss_conf 5177756
class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase RsuA/RluD
domain: Ribosomal large subunit pseudouridine synthase D, RluD
species: Escherichia coli [TaxId: 562]