HHSEARCH alignment of GI: 254780608 and SCOP domain: d2uubd1

Alignment
>d2uubd1 d.66.1.2 (D:2-209) Ribosomal protein S4 {Thermus thermophilus [TaxId: 274]}
Probab=97.72  E-value=4.1e-05  Score=49.45  Aligned_cols=52  Identities=19%  Similarity=0.316  Sum_probs=44.2

Q ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHCCCCEECCEEEC-CCCCCCCCCEEEEECC
Q ss_conf             668999998767889899999998499038878845-1121179988999356
Q gi|254780608|r   19 MRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVK-FNNRIQSGQVVRIPPV   70 (346)
Q Consensus        19 ~RLd~~L~~~~~~~sr~~~~~lir~G~V~VNG~~vk-~~~~v~~GD~I~i~~~   70 (346)
                      +|||..+-+.-=..|+.++++++..|.|.|||+++. |++.|++||+|.+-..
T Consensus        98 ~Rld~vv~r~g~a~t~~~ARQ~v~Hg~i~vNg~~v~ips~~~~~gd~I~vrek  150 (208)
T d2uubd1          98 SRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEK  150 (208)
T ss_dssp             TBHHHHHHHTTSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECGG
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHCCEECCCEEEEECCEEECCCCEEEHHHC
T ss_conf             99999998536201289888998735742288399862679428862001110


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Thermus thermophilus [TaxId: 274]