PSIBLAST alignment of GI: 254780608 and protein with PDB id: 1v9f
>gi|49259508|pdb|1V9F|A Chain A, Crystal Structure Of Catalytic Domain Of Pseudouridine Synthase Rlud From Escherichia Coli Length = 325
>gi|118138510|pdb|2IST|A Chain A, Crystal Structure Of Rlud From E. Coli Length = 325
Score = 183 bits (463), Expect = 5e-44, Method: Composition-based stats.
Identities = 73/331 (22%), Positives = 130/331 (39%), Gaps = 35/331 (10%)
Query: 11 VVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIPP 69
V ++ RLD+ +P + +++ + +V V+ K K ++ G+ V I
Sbjct: 9 TVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINA 68
Query: 70 VINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYHI 129
I + ++YED I + NKP + V G+G
Sbjct: 69 EIEEEARF---------------EPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGT 113
Query: 130 DGF---LKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSL 186
+ + + HRLD++T+G++VVA+T A L ES + R I + Y ++
Sbjct: 114 VLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAV 173
Query: 187 VWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQ 246
G A++H+++++ F L ++
Sbjct: 174 AIGHMTAGGTVDE------PISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRV-HTRLRLR 226
Query: 247 PHTGRTHQLRVHALHMGCPIVGDHKYCANFKGNF--------TSPIQNKLYLHARYMDLP 298
TGRTHQ+RVH H+ P+VGD Y + T ++ LHA + L
Sbjct: 227 LETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLY 286
Query: 299 HPEGG-RLQITAPLPAHMVKTWDSLGFKYDR 328
HP G ++ AP+P MV+ + + ++
Sbjct: 287 HPISGIEMEWHAPIPQDMVELIEVMRADFEE 317