RPSBLAST alignment for GI: 254780608 and conserved domain: TIGR01621

>gnl|CDD|130682 TIGR01621, RluA-like, pseudouridine synthase Rlu family protein, TIGR01621. This model represents a clade of sequences within the pseudouridine synthase superfamily (pfam00849). The superfamily includes E. coli proteins: RluA, RluB, RluC, RluD, and RsuA. The sequences modeled here are most closely related to RluA. Neisseria, among those species hitting this model, does not appear to have an RluA homolog. It is presumed that these sequences function as pseudouridine synthases, although perhaps with different specificity. Length = 217
 Score = 88.4 bits (219), Expect = 2e-18
 Identities = 63/213 (29%), Positives = 95/213 (44%), Gaps = 22/213 (10%)

Query: 101 LLYEDSKIYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPR--LTHRLDQETSGIL 158
           +L+      + NK  GISV    G     +  L   V ++    +  L HRLD+ TSGIL
Sbjct: 4   ILFTHPDFLLINKHPGISVHKDDG-----ETGLLQEVATQLGVGQVWLVHRLDKMTSGIL 58

Query: 159 VVARTRAAAQHLTESFRMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQ 218
           ++A    +A  L++ F  R+I+K Y +L    PK K+  I    ++KS  G       K 
Sbjct: 59  LLALNAESASELSQGFAKRKIEKTYLALSSKKPKKKQGLICGD-MEKSRRG-----SWKL 112

Query: 219 NEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALHMGCPIVGDHKYCANFKG 278
                N AI+ F      A       ++PHTG+THQLRV    +G PI+GD  Y    + 
Sbjct: 113 VNSQENPAITRFFSASA-ATGLRLFILKPHTGKTHQLRVAMKSLGSPILGDPLYGTTDE- 170

Query: 279 NFTSPIQNKLYLHARYMDLPHPEGGRLQITAPL 311
                  ++ YLHA  +   + +   +Q     
Sbjct: 171 ------SDRGYLHAFALRFDY-QNEVIQWLCDP 196