RPSBLAST alignment for GI: 254780608 and conserved domain: pfam00849

>gnl|CDD|144443 pfam00849, PseudoU_synth_2, RNA pseudouridylate synthase. Members of this family are involved in modifying bases in RNA molecules. They carry out the conversion of uracil bases to pseudouridine. This family includes RluD, a pseudouridylate synthase that converts specific uracils to pseudouridine in 23S rRNA. RluA from E. coli converts bases in both rRNA and tRNA. Length = 151

 Score =  115 bits (291), Expect = 1e-26
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 11/158 (6%)

Query: 108 IYVFNKPAGISVQGGSGIAYHIDGFLKSWVDSKGQKPRLTHRLDQETSGILVVARTRAAA 167
             V NKPAG+ V             L    +    +    HRLD++TSG+L++A+   AA
Sbjct: 1   YIVVNKPAGVPVHPTDLSDLLSLTELLLVAELGKFRLYPVHRLDRDTSGLLLLAKDGEAA 60

Query: 168 QHLTESFRMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNE--KGANY 225
             L + F  R+++K Y +LV G  + +          K+ I  D   V ++ +       
Sbjct: 61  NKLNKLFPERKVEKEYLALVDGPEEEEGTI-------KAPIKKDKNKVPRRKKEELDGKK 113

Query: 226 AISHFKVIDCF--AQKFCWLEMQPHTGRTHQLRVHALH 261
           A++H +V+      +    +E++  TGR HQ+R H   
Sbjct: 114 AVTHLRVLRSGSKIEDVSLVELELVTGRKHQIRAHLAA 151