RPSBLAST alignment for GI: 254780608 and conserved domain: cd02563
>gnl|CDD|30016 cd02563, PseudoU_synth_TruC, tRNA pseudouridine isomerase C: Pseudouridine synthases catalyze the isomerization of specific uridines in an tRNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. TruC makes psi65 in tRNAs. This psi residue is not universally conserved.. Length = 223
Score = 107 bits (269), Expect = 5e-24
Identities = 67/229 (29%), Positives = 105/229 (45%), Gaps = 25/229 (10%)
Query: 101 LLYEDSKIYVFNKPAGISVQGGSGIAYHIDGF-LKSWVDSKGQKPRLTHRLDQETSGILV 159
+LY+D + NKP+G+ V S + H F L++ D GQ HRLD+ TSG+L+
Sbjct: 3 ILYQDEHLVAINKPSGLLVHR-SELDRHETRFALQTLRDQLGQHVYPVHRLDRPTSGVLL 61
Query: 160 VARTRAAAQHLTESFRMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQN 219
A + A+ L E F R+ K Y ++V G + + + +
Sbjct: 62 FALSSEVARKLGEQFTEHRVHKTYLAVVRGYVPESGTIDYPLSEELDKLADKFA----SD 117
Query: 220 EKGANYAISHFK---------VIDCFAQ-KFCWLEMQPHTGRTHQLRVHALHMGCPIVGD 269
+K A +H++ V+ + ++ +E+ PHTGR HQLR H H+ PI+GD
Sbjct: 118 DKAPQAATTHYRLLAVEELPVVVGKYPTSRYSLVELTPHTGRKHQLRRHLAHIRHPIIGD 177
Query: 270 HKYCAN-----FKGNFTSPIQNKLYLHARYMDLPHPEGG-RLQITAPLP 312
+ F+ +F +L L A ++ HP G RL I APL
Sbjct: 178 TTHGDGRHNRFFREHFGCH---RLLLAATRLEFTHPVTGERLLIEAPLD 223