RPSBLAST alignment of GI: 254780608 and MMDB domain: 1v9f_A_
>1v9f_A (A:) Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli}Length = 325
Score = 117 bits (294), Expect = 2e-27
Identities = 71/332 (21%), Positives = 128/332 (38%), Gaps = 33/332 (9%)
Query: 10 VVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRVKFNNRIQSGQVVRIPP 69
V ++ RLD+ +P + +++ + +V V+ K G
Sbjct: 8 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 67
Query: 70 VINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYHI 129
+ Q I ++YED I + NKP + V G+G
Sbjct: 68 AEIEEEARFEPQDI--------------PLDIVYEDEDIIIINKPRDLVVHPGAGNPDGT 113
Query: 130 DGFLKSWV---DSKGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWSL 186
+ + + HRLD++T+G++VVA+T A L ES + R I + Y ++
Sbjct: 114 VLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAV 173
Query: 187 VWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEMQ 246
G + VH A++H+++++ F ++
Sbjct: 174 AIGHMTAGGTVDEPISRHPTKRTHMAVHP------MGKPAVTHYRIMEHFRVHTRL-RLR 226
Query: 247 PHTGRTHQLRVHALHMGCPIVGDHKYCANFKGNFTSP--------IQNKLYLHARYMDLP 298
TGRTHQ+RVH H+ P+VGD Y + + ++ LHA + L
Sbjct: 227 LETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLY 286
Query: 299 HPEGGR-LQITAPLPAHMVKTWDSLGFKYDRN 329
HP G ++ AP+P MV+ + + ++ +
Sbjct: 287 HPISGIEMEWHAPIPQDMVELIEVMRADFEEH 318