RPSBLAST alignment of GI: 254780608 and protein with PDBid: 1v9f
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A Length = 325
Score = 133 bits (336), Expect = 4e-32
Identities = 76/333 (22%), Positives = 135/333 (40%), Gaps = 35/333 (10%)
Query: 10 VVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIP 68
V ++ RLD+ +P + +++ + +V V+ K K ++ G+ V I
Sbjct: 8 ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 67
Query: 69 PVINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYH 128
I + LD +YED I + NKP + V G+G
Sbjct: 68 AEIEEEARFEPQDIPLDI---------------VYEDEDIIIINKPRDLVVHPGAGNPDG 112
Query: 129 IDGFLKSWVDS---KGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185
+ + HRLD++T+G++VVA+T A L ES + R I + Y +
Sbjct: 113 TVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEA 172
Query: 186 LVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEM 245
+ G + VH A++H+++++ F + L +
Sbjct: 173 VAIGHMTAGGTVDEPISRHPTKRTHMAVH------PMGKPAVTHYRIMEHF-RVHTRLRL 225
Query: 246 QPHTGRTHQLRVHALHMGCPIVGDHKYCANFKGNFTSPIQ--------NKLYLHARYMDL 297
+ TGRTHQ+RVH H+ P+VGD Y + + ++ LHA + L
Sbjct: 226 RLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRL 285
Query: 298 PHPEGG-RLQITAPLPAHMVKTWDSLGFKYDRN 329
HP G ++ AP+P MV+ + + ++ +
Sbjct: 286 YHPISGIEMEWHAPIPQDMVELIEVMRADFEEH 318