RPSBLAST alignment of GI: 254780608 and protein with PDBid: 1v9f

>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A Length = 325
 Score =  133 bits (336), Expect = 4e-32
 Identities = 76/333 (22%), Positives = 135/333 (40%), Gaps = 35/333 (10%)

Query: 10  VVVENDEENMRLDRWFKNHYPHINFVNLQKILRSGQVRVDKKRV-KFNNRIQSGQVVRIP 68
             V  ++   RLD+     +P  +   +++ +   +V V+ K   K   ++  G+ V I 
Sbjct: 8   ATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAIN 67

Query: 69  PVINALNHIIKEQKILDSSVNLTKHSDFLKSILLYEDSKIYVFNKPAGISVQGGSGIAYH 128
             I        +   LD                +YED  I + NKP  + V  G+G    
Sbjct: 68  AEIEEEARFEPQDIPLDI---------------VYEDEDIIIINKPRDLVVHPGAGNPDG 112

Query: 129 IDGFLKSWVDS---KGQKPRLTHRLDQETSGILVVARTRAAAQHLTESFRMRRIQKIYWS 185
                            +  + HRLD++T+G++VVA+T  A   L ES + R I + Y +
Sbjct: 113 TVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEA 172

Query: 186 LVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQNEKGANYAISHFKVIDCFAQKFCWLEM 245
           +  G                +      VH           A++H+++++ F +    L +
Sbjct: 173 VAIGHMTAGGTVDEPISRHPTKRTHMAVH------PMGKPAVTHYRIMEHF-RVHTRLRL 225

Query: 246 QPHTGRTHQLRVHALHMGCPIVGDHKYCANFKGNFTSPIQ--------NKLYLHARYMDL 297
           +  TGRTHQ+RVH  H+  P+VGD  Y    +    +           ++  LHA  + L
Sbjct: 226 RLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRL 285

Query: 298 PHPEGG-RLQITAPLPAHMVKTWDSLGFKYDRN 329
            HP  G  ++  AP+P  MV+  + +   ++ +
Sbjct: 286 YHPISGIEMEWHAPIPQDMVELIEVMRADFEEH 318