RPSBLAST alignment of GI: 254780608 and SCOP domain: d1v9fa_

Alignment
>d1v9fa_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase D, RluD {Escherichia coli [TaxId: 562]} Length = 250
 Score =  105 bits (261), Expect = 8e-24
 Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 19/240 (7%)

Query: 102 LYEDSKIYVFNKPAGISVQGGSGIAYH--IDGFLKSWVDSKGQK-PRLTHRLDQETSGIL 158
           +YED  I + NKP  + V  G+G      ++  L  +          + HRLD++T+G++
Sbjct: 11  VYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLM 70

Query: 159 VVARTRAAAQHLTESFRMRRIQKIYWSLVWGIPKNKKECIANWLLKKSHIGGDYVHVVKQ 218
           VVA+T  A   L ES + R I + Y ++  G                +      VH    
Sbjct: 71  VVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVH---- 126

Query: 219 NEKGANYAISHFKVIDCFAQKFCWLEMQPHTGRTHQLRVHALHMGCPIVGDHKYCANFKG 278
                  A++H+++++ F +    L ++  TGRTHQ+RVH  H+  P+VGD  Y    + 
Sbjct: 127 --PMGKPAVTHYRIMEHF-RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRP 183

Query: 279 NFTSPIQ--------NKLYLHARYMDLPHPEGG-RLQITAPLPAHMVKTWDSLGFKYDRN 329
              +           ++  LHA  + L HP  G  ++  AP+P  MV+  + +   ++ +
Sbjct: 184 PKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEH 243

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase RsuA/RluD
domain: Ribosomal large subunit pseudouridine synthase D, RluD
species: Escherichia coli [TaxId: 562]