HHsearch alignment for GI: 254780610 and conserved domain: PRK00989

>PRK00989 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.22  E-value=0.00051  Score=43.73  Aligned_cols=71  Identities=28%  Similarity=0.382  Sum_probs=49.5

Q ss_pred             CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r   97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG  176 (340)
Q Consensus        97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~  176 (340)
T Consensus         9 ~GillidKP~G~TS~--------~vv~~vkk~l~~--------kKvGH~GTLDP~AtGvLiv~iG~~~-Tkl~~~~~---   68 (235)
T PRK00989          9 EGILLVDKPQGRTSF--------SLIRALTKLIGV--------KKIGHAGTLDPFATGVMVMLIGRKF-TRLSDILL---   68 (235)
T ss_pred             CCEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEECCCCC-CCHHHHHC---
T ss_conf             819999789999989--------999999998587--------7468786779744352888407451-12789867---


Q ss_pred             CCCCEEEEEEEEEE
Q ss_conf             13221334454320
Q gi|254780610|r  177 KSTRLKRAYYAMVW  190 (340)
Q Consensus       177 ~~~~v~K~Y~Aiv~  190 (340)
T Consensus        69 ---~~~K~Y~a~i~   79 (235)
T PRK00989         69 ---FEDKEYAAIAH   79 (235)
T ss_pred             ---CCCCEEEEEEE
T ss_conf             ---57846999999