HHsearch alignment for GI: 254780610 and conserved domain: PRK00989
>PRK00989 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.22 E-value=0.00051 Score=43.73 Aligned_cols=71 Identities=28% Similarity=0.382 Sum_probs=49.5
Q ss_pred CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r 97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG 176 (340)
Q Consensus 97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~ 176 (340)
T Consensus 9 ~GillidKP~G~TS~--------~vv~~vkk~l~~--------kKvGH~GTLDP~AtGvLiv~iG~~~-Tkl~~~~~--- 68 (235)
T PRK00989 9 EGILLVDKPQGRTSF--------SLIRALTKLIGV--------KKIGHAGTLDPFATGVMVMLIGRKF-TRLSDILL--- 68 (235)
T ss_pred CCEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEECCCCC-CCHHHHHC---
T ss_conf 819999789999989--------999999998587--------7468786779744352888407451-12789867---
Q ss_pred CCCCEEEEEEEEEE
Q ss_conf 13221334454320
Q gi|254780610|r 177 KSTRLKRAYYAMVW 190 (340)
Q Consensus 177 ~~~~v~K~Y~Aiv~ 190 (340)
T Consensus 69 ---~~~K~Y~a~i~ 79 (235)
T PRK00989 69 ---FEDKEYAAIAH 79 (235)
T ss_pred ---CCCCEEEEEEE
T ss_conf ---57846999999