HHsearch alignment for GI: 254780610 and conserved domain: PRK02755
>PRK02755 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.02 E-value=0.0086 Score=36.41 Aligned_cols=69 Identities=32% Similarity=0.374 Sum_probs=46.6
Q ss_pred CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r 97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG 176 (340)
Q Consensus 97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~ 176 (340)
T Consensus 2 ~G~l~i~Kp~G~tS~--------~vv~~~k~~~~~--------kKvGH~GTLDP~AtGvL~i~~G~aT--k~~~~l---- 59 (291)
T PRK02755 2 QGFLNLNKPAGWTSH--------DCVAKLRRLLRL--------KRVGHGGTLDPAATGVLPIAVGKAT--RLLPYL---- 59 (291)
T ss_pred CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEEECHHH--EECCCC----
T ss_conf 769998359989989--------999999998588--------8367785779755052899976576--643004----
Q ss_pred CCCCEEEEEEEEEE
Q ss_conf 13221334454320
Q gi|254780610|r 177 KSTRLKRAYYAMVW 190 (340)
Q Consensus 177 ~~~~v~K~Y~Aiv~ 190 (340)
T Consensus 60 ~--~-~K~Y~~~~~ 70 (291)
T PRK02755 60 P--S-GKAYKATVR 70 (291)
T ss_pred C--C-CCEEEEEEE
T ss_conf 8--9-958999999