HHsearch alignment for GI: 254780610 and conserved domain: PRK03287
>PRK03287 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.74 E-value=0.0022 Score=39.92 Aligned_cols=70 Identities=27% Similarity=0.436 Sum_probs=48.3
Q ss_pred CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r 97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG 176 (340)
Q Consensus 97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~ 176 (340)
T Consensus 9 sGil~idKP~G~TS~--------~vv~~vk~~~~~--------kKvGH~GTLDP~AtGvL~v~~G~a--TKl~~~~~~-- 68 (298)
T PRK03287 9 SGLVVVDKPAGMTSH--------DVVARCRRIFGT--------RKVGHAGTLDPMATGVLVLGVERA--TKLLGHLVA-- 68 (298)
T ss_pred CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEEECHH--HCCCHHHCC--
T ss_conf 789999479999989--------999999998489--------833668577974604389997877--621874655--
Q ss_pred CCCCEEEEEEEEEE
Q ss_conf 13221334454320
Q gi|254780610|r 177 KSTRLKRAYYAMVW 190 (340)
Q Consensus 177 ~~~~v~K~Y~Aiv~ 190 (340)
T Consensus 69 ----~~K~Y~a~~~ 78 (298)
T PRK03287 69 ----TDKSYTATIR 78 (298)
T ss_pred ----CCCEEEEEEE
T ss_conf ----7817999999