HHsearch alignment for GI: 254780610 and conserved domain: PRK03287

>PRK03287 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.74  E-value=0.0022  Score=39.92  Aligned_cols=70  Identities=27%  Similarity=0.436  Sum_probs=48.3

Q ss_pred             CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r   97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG  176 (340)
Q Consensus        97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~  176 (340)
T Consensus         9 sGil~idKP~G~TS~--------~vv~~vk~~~~~--------kKvGH~GTLDP~AtGvL~v~~G~a--TKl~~~~~~--   68 (298)
T PRK03287          9 SGLVVVDKPAGMTSH--------DVVARCRRIFGT--------RKVGHAGTLDPMATGVLVLGVERA--TKLLGHLVA--   68 (298)
T ss_pred             CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEEECHH--HCCCHHHCC--
T ss_conf             789999479999989--------999999998489--------833668577974604389997877--621874655--


Q ss_pred             CCCCEEEEEEEEEE
Q ss_conf             13221334454320
Q gi|254780610|r  177 KSTRLKRAYYAMVW  190 (340)
Q Consensus       177 ~~~~v~K~Y~Aiv~  190 (340)
T Consensus        69 ----~~K~Y~a~~~   78 (298)
T PRK03287         69 ----TDKSYTATIR   78 (298)
T ss_pred             ----CCCEEEEEEE
T ss_conf             ----7817999999