HHsearch alignment for GI: 254780610 and conserved domain: PRK04099
>PRK04099 truB tRNA pseudouridine synthase B; Provisional.
Probab=97.11 E-value=0.00069 Score=42.94 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=49.0
Q ss_pred CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r 97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG 176 (340)
Q Consensus 97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~ 176 (340)
T Consensus 2 ngil~i~KP~G~TS~--------~vv~~vkk~l~~--------kKvGH~GTLDP~AtGvLiv~~G~a--TKl~~~l~--- 60 (272)
T PRK04099 2 NRLFVANKPPGLSSN--------AFLSRLKRKYGV--------KKAGFSGTLDPFAKGVLIVAFGQY--TKLFRFLD--- 60 (272)
T ss_pred CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEEECHH--HHHHHHHC---
T ss_conf 739996189989989--------999999998499--------844637056986604599998877--63117667---
Q ss_pred CCCCEEEEEEEEEE
Q ss_conf 13221334454320
Q gi|254780610|r 177 KSTRLKRAYYAMVW 190 (340)
Q Consensus 177 ~~~~v~K~Y~Aiv~ 190 (340)
T Consensus 61 ---~~~K~Y~a~i~ 71 (272)
T PRK04099 61 ---KTPKTYKATLW 71 (272)
T ss_pred ---CCCCEEEEEEE
T ss_conf ---78827999999