HHsearch alignment for GI: 254780610 and conserved domain: PRK05033

>PRK05033 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.52  E-value=0.0037  Score=38.63  Aligned_cols=70  Identities=17%  Similarity=0.372  Sum_probs=47.8

Q ss_pred             CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r   97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG  176 (340)
Q Consensus        97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~  176 (340)
T Consensus        12 ~Gil~idKP~g~TS~--------~~v~~~kk~~~~--------kKvGH~GTLDP~AtGvL~i~~G~a--TK~~~~~~~--   71 (314)
T PRK05033         12 NGVLLLDKPQGMSSN--------DALQKVKRIYNA--------NKAGHTGALDPLATGMLPICLGEA--TKFSQFLLD--   71 (314)
T ss_pred             CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEEECHH--HHHHHHHCC--
T ss_conf             679998159999989--------999999998588--------856878577975602189998888--704088668--


Q ss_pred             CCCCEEEEEEEEEE
Q ss_conf             13221334454320
Q gi|254780610|r  177 KSTRLKRAYYAMVW  190 (340)
Q Consensus       177 ~~~~v~K~Y~Aiv~  190 (340)
T Consensus        72 ----~~K~Y~~~~~   81 (314)
T PRK05033         72 ----SDKRYRVIAK   81 (314)
T ss_pred             ----CCCEEEEEEE
T ss_conf             ----9917999999