HHsearch alignment for GI: 254780610 and conserved domain: PRK05033
>PRK05033 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.52 E-value=0.0037 Score=38.63 Aligned_cols=70 Identities=17% Similarity=0.372 Sum_probs=47.8
Q ss_pred CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r 97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG 176 (340)
Q Consensus 97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~ 176 (340)
T Consensus 12 ~Gil~idKP~g~TS~--------~~v~~~kk~~~~--------kKvGH~GTLDP~AtGvL~i~~G~a--TK~~~~~~~-- 71 (314)
T PRK05033 12 NGVLLLDKPQGMSSN--------DALQKVKRIYNA--------NKAGHTGALDPLATGMLPICLGEA--TKFSQFLLD-- 71 (314)
T ss_pred CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEEECHH--HHHHHHHCC--
T ss_conf 679998159999989--------999999998588--------856878577975602189998888--704088668--
Q ss_pred CCCCEEEEEEEEEE
Q ss_conf 13221334454320
Q gi|254780610|r 177 KSTRLKRAYYAMVW 190 (340)
Q Consensus 177 ~~~~v~K~Y~Aiv~ 190 (340)
T Consensus 72 ----~~K~Y~~~~~ 81 (314)
T PRK05033 72 ----SDKRYRVIAK 81 (314)
T ss_pred ----CCCEEEEEEE
T ss_conf ----9917999999