HHsearch alignment for GI: 254780610 and conserved domain: PRK05389
>PRK05389 truB tRNA pseudouridine synthase B; Provisional.
Probab=96.86 E-value=0.0023 Score=39.88 Aligned_cols=70 Identities=21% Similarity=0.337 Sum_probs=48.4
Q ss_pred CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r 97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG 176 (340)
Q Consensus 97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~ 176 (340)
T Consensus 13 ~G~l~idKP~G~TS~--------~vv~~vkk~~~~--------kKvGH~GTLDP~AtGvL~i~~G~a--Tk~~~~~~~-- 72 (305)
T PRK05389 13 SGWLILDKPAGMTST--------EAVSKVKWLFDA--------QKAGHAGTLDPLASGVLPIALGEA--TKTVPYVMD-- 72 (305)
T ss_pred CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEEECHH--HHHHHHHCC--
T ss_conf 779998249999989--------999999998588--------856778677986602388998877--623367656--
Q ss_pred CCCCEEEEEEEEEE
Q ss_conf 13221334454320
Q gi|254780610|r 177 KSTRLKRAYYAMVW 190 (340)
Q Consensus 177 ~~~~v~K~Y~Aiv~ 190 (340)
T Consensus 73 ----~~K~Y~~~~~ 82 (305)
T PRK05389 73 ----GTKRYRFTVA 82 (305)
T ss_pred ----CCEEEEEEEE
T ss_conf ----8807999999