HHsearch alignment for GI: 254780610 and conserved domain: PRK10839
>PRK10839 16S rRNA pseudouridylate synthase A; Provisional.
Probab=99.93 E-value=4.1e-25 Score=169.45 Aligned_cols=200 Identities=20% Similarity=0.292 Sum_probs=134.9
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCHHCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 75789999871768898999999985990499899328675804898899970560111102332222210144027899
Q gi|254780610|r 23 GRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDIIVI 102 (340)
Q Consensus 23 ~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~~~~~~~~~~~~IlyED~~llvi 102 (340)
T Consensus 1 mRL~K~La~~g--~~SRR~ae~lI~~GrV~VNg~~v~~~~~~V~~~~~v~vdg~~i~~~-------------~~~~y~~l 65 (231)
T PRK10839 1 MRLDKFIAQQL--GVSRAIAGREIRGNRVTVDGEIVKNAAFKLLPEHDVAYDGNPLAQQ-------------HGPRYFML 65 (231)
T ss_pred CCHHHHHHHCC--CCCHHHHHHHHHCCEEEECCEEECCCCEECCCCCEEEECCCEECCC-------------CCCEEEEE
T ss_conf 93789998878--9569999999987979999999145880849998699919586146-------------68689999
Q ss_pred ECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 62401110456787542100222222102443344443643244443323240572120357888899999721132213
Q gi|254780610|r 103 NKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRLK 182 (340)
Q Consensus 103 nKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~~~~v~ 182 (340)
T Consensus 66 nKP~G~v~s~~d~~-~~~~~~~l~~---------~~~~~l~~vGRLD~ds~GLlllTnDg~l~~~l~------~P~~~i~ 129 (231)
T PRK10839 66 NKPQGYVCSTDDPD-HPTVLYFLDE---------PVAYKLHAAGRLDIDTTGLVLMTDDGQWSHRIT------SPRHHCE 129 (231)
T ss_pred ECCCCCCCCCCCCC-CCCEEEECCC---------CCCCCEEEEECCCCCCCCEEEECCCHHHHHHCC------CCCCCCC
T ss_conf 89987534788999-9726986376---------555635770046889877699768889995351------8768997
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCEECCCCCEEECCCCCCCCCEEEEEECHHHHHHHH
Q ss_conf 3445432024332332110013434443322123444555-553000012221011256677500123443115899999
Q gi|254780610|r 183 RAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDK-TADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIR 261 (340)
Q Consensus 183 K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~-~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~TGRtHQIR 261 (340)
T Consensus 130 k~Y~V~v~~~i~~~~--l~~---------l~~Gv~i~~~~~~~~~~~--v~~~---~------~~~~~i~l~eGk~rqIR 187 (231)
T PRK10839 130 KTYLVTLESPVADDT--AEQ---------FAKGVQLHNEKDLTKPAV--LEVI---T------PTQVRLTISEGRYHQVK 187 (231)
T ss_pred EEEEEEECCCCCHHH--HHH---------HHCCCEECCEECCEEEEE--EEEC---C------CCEEEEEEECCCCHHHH
T ss_conf 899999898799999--999---------967969878231160369--9984---8------96999999668767999
Q ss_pred HHHHHHCCEEECCC
Q ss_conf 99987097860415
Q gi|254780610|r 262 VHMAHKGNPLIGDP 275 (340)
Q Consensus 262 vhla~lG~PIvGD~ 275 (340)
T Consensus 188 rmf~~~g~~V~~L~ 201 (231)
T PRK10839 188 RMFAAVGNRVVELH 201 (231)
T ss_pred HHHHHCCCEEEEEE
T ss_conf 99998599898999