HHsearch alignment for GI: 254780610 and conserved domain: PRK11112
>PRK11112 tRNA pseudouridine synthase C; Provisional.
Probab=100.00 E-value=0 Score=449.63 Aligned_cols=230 Identities=27% Similarity=0.457 Sum_probs=182.5
Q ss_pred HHHCCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHH
Q ss_conf 22101440278996240111045678754210022222210244334444364324444332324057212035788889
Q gi|254780610|r 90 LDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLS 169 (340)
Q Consensus 90 ~~IlyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~ 169 (340)
T Consensus 2 L~IlyED~~llVVnKPaGl~vh~~~~~~~~~~~--~~~~l~~~~-----~~~~~~VHRLDr~TSGllv~AK~~~a~~~L~ 74 (257)
T PRK11112 2 LEILYQDEWLVAVNKPAGWLVHRSWLDRHETVF--VMQTVRDQI-----GQHVFTAHRLDRPTSGVLLMALSSEAARLLA 74 (257)
T ss_pred EEEEEECCCEEEEECCCCCCCCCCCCCCCCCHH--HHHHHHHHC-----CCCCCCCCCCCCCCCEEEEEECCHHHHHHHH
T ss_conf 579996698999999999864799888785199--999998752-----7765320577898751799968999999999
Q ss_pred HHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEEC------CCCCC
Q ss_conf 999972113221334454320243323321100134344433221234445555530000122210112------56677
Q gi|254780610|r 170 EQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYN------KNSNF 243 (340)
Q Consensus 170 ~~f~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~------~~~~~ 243 (340)
T Consensus 75 ~~f~----~~~v~K~Y~Alv~G~~~-~~~~i~~~l~~~~~~~~~~--~~~~~~~~k~a~T~~~~l~~~~~~~~~~~~~~~ 147 (257)
T PRK11112 75 QQFE----QHQIQKTYHAIVRGWLM-EEAVLDYPLKEELDKIADK--FAREDKEPQPAVTHYRGLATVEMPVATGRYPTT 147 (257)
T ss_pred HHHH----HCCCCEEEEEEEEEECC-CCCEEEEECCCCCCCCCCE--EECCCCCCEEEEEEEEEEEEEEEECCCCCCCCC
T ss_conf 9987----57686399999964538-9976852434466655631--302289863634541110268751012324678
Q ss_pred CCCEEEEEECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCCCCEEEEE
Q ss_conf 50012344311589999999987097860415447755444334570135544079804432100042468897689998
Q gi|254780610|r 244 AVSLLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQ 323 (340)
Q Consensus 244 ~~slv~~~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t~~~~~f~ 323 (340)
T Consensus 148 ~~sLv~~~p~TGRtHQIRvHla~lGhPIvGD~~YG~~~~~-------~~~~~~~~~~R~~LHA~~L~F~HP~tge~~~~~ 220 (257)
T PRK11112 148 RYSLVELEPKTGRKHQLRRHMAHLRHPIIGDSKHGDLRQN-------RSFAEHFGCSRLMLHASELSLTHPFTGEPLTIT 220 (257)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCEECCCCCCCCCCC-------CHHHHCCCCCCHHHCCCCCEEECCCCCCEEEEE
T ss_conf 5799999648685299999999879967577255875446-------014542399636550183475785999869998
Q ss_pred CCCCHHHHHHHHHHHCC
Q ss_conf 49978999999988519
Q gi|254780610|r 324 VPIPEDMLTVIRKLNEK 340 (340)
Q Consensus 324 aplP~~~~~~l~~L~~~ 340 (340)
T Consensus 221 AplP~d~~~ll~~~g~~ 237 (257)
T PRK11112 221 AGLDETWQQLLSQFGWR 237 (257)
T ss_pred CCCHHHHHHHHHHCCCC
T ss_conf 16859999999976998