HHsearch alignment for GI: 254780610 and conserved domain: PRK11394
>PRK11394 23S rRNA pseudouridine synthase E; Provisional.
Probab=99.65 E-value=4.8e-16 Score=115.39 Aligned_cols=146 Identities=27% Similarity=0.361 Sum_probs=92.9
Q ss_pred EEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 27899624011104567875421002222221024433444436432444433232405721203578888999997211
Q gi|254780610|r 98 DIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGK 177 (340)
Q Consensus 98 ~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~ 177 (340)
T Consensus 30 r~illnKP~G~i~T~~D~~gR~tV~dllp------------~~~l~pVGRLD~dSeGLLLlTNDG~la~~L~------hP 91 (207)
T PRK11394 30 RVILFNKPYDVLPQFTDEAGRKTLKEFIP------------VQGVYAAGRLDRDSEGLLVLTNNGALQARLT------QP 91 (207)
T ss_pred EEEEEECCCCEEECCCCCCCCCCHHHHCC------------CCCCEECCCCCCCCCCEEEECCCHHHHHHHH------CC
T ss_conf 89999899985868889999976789688------------5674577776789877299808789998752------56
Q ss_pred CCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCE----------EECCCCCCCCCE
Q ss_conf 3221334454320243323321100134344433221234445555530000122210----------112566775001
Q gi|254780610|r 178 STRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIE----------IYNKNSNFAVSL 247 (340)
Q Consensus 178 ~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~----------~~~~~~~~~~sl 247 (340)
T Consensus 92 ~~~i~K~Y~V~v~g~~~~~~--l~~-l~--------~Gv~i~dg-~~~p~~~--~~v~~~~~~~~~~~~~~~~~~~~~s~ 157 (207)
T PRK11394 92 GKRTGKIYYVQVEGIPTQDA--LEA-LR--------NGVTLNDG-PTLPAGA--ELVDEPAWLWPRNPPIRERKSIPTSW 157 (207)
T ss_pred CCCCCEEEEEEECCCCCHHH--HHH-HH--------CCCEECCE-EEEEEEE--EEECCCCCCCCCCCCHHHCCCCCCCE
T ss_conf 57977899999916899999--999-97--------79785984-7645489--99447421234576411102578657
Q ss_pred EEEEECHHHHHHHHHHHHHHCCEEECCC
Q ss_conf 2344311589999999987097860415
Q gi|254780610|r 248 LKCHLETGRTHQIRVHMAHKGNPLIGDP 275 (340)
Q Consensus 248 v~~~~~TGRtHQIRvhla~lG~PIvGD~ 275 (340)
T Consensus 158 l~i~L~EGKnRqIRRmf~~~G~~V~~L~ 185 (207)
T PRK11394 158 LKITLYEGRNRQVRRMTAHVGFPTLRLI 185 (207)
T ss_pred EEEEEEECCCHHHHHHHHHCCCEEEEEE
T ss_conf 9999974635999999998699793899