HHsearch alignment for GI: 254780610 and conserved domain: TIGR00005
>TIGR00005 rluA_subfam pseudouridine synthase, RluA family; InterPro: IPR006225 This is the RluD subfamily of pseudouridine synthases. In Escherichia coli, RluD (SfhB) modifies uridine to pseudouridine at 23S RNA U1911, 1915, and 1917. RluC modifies 955, 2504 and 2580, and RluA modifies U746 and tRNA U32. An additional homologue from E. coli outside this family, TruC (Q46918 from SWISSPROT), modifies uracil-65 in transfer RNAs to pseudouridine. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis.
Probab=100.00 E-value=0 Score=599.63 Aligned_cols=309 Identities=46% Similarity=0.752 Sum_probs=277.6
Q ss_pred HHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECC-EEECCCCCEECCCCEEE-EEECCC-HHCCHHHHHHH----H
Q ss_conf 11368757899998717688989999999859904998-99328675804898899-970560-11110233222----2
Q gi|254780610|r 18 DSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISING-MVSKNPNRKVVPGDSFL-ITVPAA-QKLNIAQENIP----L 90 (340)
Q Consensus 18 ~~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG-~~~~~~~~~l~~gd~I~-i~~~~~-~~~~~~~~~~~----~ 90 (340)
T Consensus 1 ~~~~g~Rld~~L~~~l~-~~sr~~~~~~i~~G~V~vN~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~p~~l~l 79 (337)
T TIGR00005 1 EEQAGQRLDDFLASLLP-DLSRSRIQKLIENGQVKVNKGKVTANPKLKIKDGDRITPVRVPEEQEELEVPVQDIPADLKL 79 (337)
T ss_pred CCCCCHHHHHHHHHHHC-CCCHHHHHHHHHCCCEEECCCCCCCCCCEEECCCCEEECEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 97430269999999836-78888999998749689637642567430523874660100146433235766567342211
Q ss_pred HHCCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 21014402789962401110456787542100222222102443344443643244443323240572120357888899
Q gi|254780610|r 91 DILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSE 170 (340)
Q Consensus 91 ~IlyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~ 170 (340)
T Consensus 80 ~IlfEDe~i~vinKP~G~~vHP~~~~~~~Tv~~~L~~~~~~~~~gig~~~~~~~vHRLD~dTSGl~~vAK~~~A~~~L~~ 159 (337)
T TIGR00005 80 DILFEDEDILVINKPSGLVVHPGGGNSFGTVLNALLAHCPERLSGIGGVFRVGIVHRLDRDTSGLMVVAKTRLALRELQR 159 (337)
T ss_pred EEEEECCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECHHHHHHHHH
T ss_conf 37875083899978987564488888735489999986476643457612361355247787258999708689999999
Q ss_pred HHHHHCCCCCEEEEEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEE
Q ss_conf 999721132213344543202433-2332110013434443322123444555553000012221011256677500123
Q gi|254780610|r 171 QFVDHGKSTRLKRAYYAMVWGIPL-PDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLK 249 (340)
Q Consensus 171 ~f~~~~~~~~v~K~Y~Aiv~G~~~-~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~ 249 (340)
T Consensus 160 ql----~~~~~~k~Y~A~V~G~~~~~~~~~~~~P~~r~~~~~~~~~v~~~~~~~GK~A~T~f~~~~~~---A~~~~sl~~ 232 (337)
T TIGR00005 160 QL----KERTVTKEYVALVHGEFDLSKKGTVDAPLGRVPNNRGKMAVAPSSEKEGKPAVTHFKVLERI---ADGNASLVE 232 (337)
T ss_pred HH----HHCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEEHHH---CCCCCCEEE
T ss_conf 99----83861178999983176887644780653236886026899767888896123421210011---044521899
Q ss_pred EEECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCC---------CCEE
Q ss_conf 4431158999999998709786041544775544433457013554407980443210004246889---------7689
Q gi|254780610|r 250 CHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRN---------NQDM 320 (340)
Q Consensus 250 ~~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t---------~~~~ 320 (340)
T Consensus 233 ~~L~TGRTHQIRVHl~~~ghPl~gD~~YG~~~~~~~~~g----~~~~~~~~~q~LHA~~l~f~HP~~~~W~~~~~~ge~~ 308 (337)
T TIGR00005 233 CELETGRTHQIRVHLQYLGHPLAGDPLYGNKPKKGNNLG----LEGLLNFDRQALHAYELGFIHPATSSWYHNETKGELL 308 (337)
T ss_pred EEECCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCC----CCCCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf 985348973899999971685314325688887832145----1003675402311455310378886621447787143
Q ss_pred E-----------EECCCCHHHHHHHHHHH
Q ss_conf 9-----------98499789999999885
Q gi|254780610|r 321 D-----------FQVPIPEDMLTVIRKLN 338 (340)
Q Consensus 321 ~-----------f~aplP~~~~~~l~~L~ 338 (340)
T Consensus 309 ~~~~C~~Ce~~~~~AP~p~~~~~~l~~L~ 337 (337)
T TIGR00005 309 EGKKCSECETELFEAPLPADLKELLEALR 337 (337)
T ss_pred CCCCCCCCCCCHHHCCCCHHHHHHHHHCC
T ss_conf 26505324762110588079999999609