HHsearch alignment for GI: 254780610 and conserved domain: TIGR00005

>TIGR00005 rluA_subfam pseudouridine synthase, RluA family; InterPro: IPR006225 This is the RluD subfamily of pseudouridine synthases. In Escherichia coli, RluD (SfhB) modifies uridine to pseudouridine at 23S RNA U1911, 1915, and 1917. RluC modifies 955, 2504 and 2580, and RluA modifies U746 and tRNA U32. An additional homologue from E. coli outside this family, TruC (Q46918 from SWISSPROT), modifies uracil-65 in transfer RNAs to pseudouridine. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis.
Probab=100.00  E-value=0  Score=599.63  Aligned_cols=309  Identities=46%  Similarity=0.752  Sum_probs=277.6

Q ss_pred             HHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECC-EEECCCCCEECCCCEEE-EEECCC-HHCCHHHHHHH----H
Q ss_conf             11368757899998717688989999999859904998-99328675804898899-970560-11110233222----2
Q gi|254780610|r   18 DSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISING-MVSKNPNRKVVPGDSFL-ITVPAA-QKLNIAQENIP----L   90 (340)
Q Consensus        18 ~~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG-~~~~~~~~~l~~gd~I~-i~~~~~-~~~~~~~~~~~----~   90 (340)
T Consensus         1 ~~~~g~Rld~~L~~~l~-~~sr~~~~~~i~~G~V~vN~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~p~~l~l   79 (337)
T TIGR00005         1 EEQAGQRLDDFLASLLP-DLSRSRIQKLIENGQVKVNKGKVTANPKLKIKDGDRITPVRVPEEQEELEVPVQDIPADLKL   79 (337)
T ss_pred             CCCCCHHHHHHHHHHHC-CCCHHHHHHHHHCCCEEECCCCCCCCCCEEECCCCEEECEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             97430269999999836-78888999998749689637642567430523874660100146433235766567342211


Q ss_pred             HHCCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf             21014402789962401110456787542100222222102443344443643244443323240572120357888899
Q gi|254780610|r   91 DILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSE  170 (340)
Q Consensus        91 ~IlyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~  170 (340)
T Consensus        80 ~IlfEDe~i~vinKP~G~~vHP~~~~~~~Tv~~~L~~~~~~~~~gig~~~~~~~vHRLD~dTSGl~~vAK~~~A~~~L~~  159 (337)
T TIGR00005        80 DILFEDEDILVINKPSGLVVHPGGGNSFGTVLNALLAHCPERLSGIGGVFRVGIVHRLDRDTSGLMVVAKTRLALRELQR  159 (337)
T ss_pred             EEEEECCCEEEEECCCCEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECHHHHHHHHH
T ss_conf             37875083899978987564488888735489999986476643457612361355247787258999708689999999


Q ss_pred             HHHHHCCCCCEEEEEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEE
Q ss_conf             999721132213344543202433-2332110013434443322123444555553000012221011256677500123
Q gi|254780610|r  171 QFVDHGKSTRLKRAYYAMVWGIPL-PDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLK  249 (340)
Q Consensus       171 ~f~~~~~~~~v~K~Y~Aiv~G~~~-~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~  249 (340)
T Consensus       160 ql----~~~~~~k~Y~A~V~G~~~~~~~~~~~~P~~r~~~~~~~~~v~~~~~~~GK~A~T~f~~~~~~---A~~~~sl~~  232 (337)
T TIGR00005       160 QL----KERTVTKEYVALVHGEFDLSKKGTVDAPLGRVPNNRGKMAVAPSSEKEGKPAVTHFKVLERI---ADGNASLVE  232 (337)
T ss_pred             HH----HHCCCEEEEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEEHHH---CCCCCCEEE
T ss_conf             99----83861178999983176887644780653236886026899767888896123421210011---044521899


Q ss_pred             EEECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCC---------CCEE
Q ss_conf             4431158999999998709786041544775544433457013554407980443210004246889---------7689
Q gi|254780610|r  250 CHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRN---------NQDM  320 (340)
Q Consensus       250 ~~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t---------~~~~  320 (340)
T Consensus       233 ~~L~TGRTHQIRVHl~~~ghPl~gD~~YG~~~~~~~~~g----~~~~~~~~~q~LHA~~l~f~HP~~~~W~~~~~~ge~~  308 (337)
T TIGR00005       233 CELETGRTHQIRVHLQYLGHPLAGDPLYGNKPKKGNNLG----LEGLLNFDRQALHAYELGFIHPATSSWYHNETKGELL  308 (337)
T ss_pred             EEECCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCC----CCCCCCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf             985348973899999971685314325688887832145----1003675402311455310378886621447787143


Q ss_pred             E-----------EECCCCHHHHHHHHHHH
Q ss_conf             9-----------98499789999999885
Q gi|254780610|r  321 D-----------FQVPIPEDMLTVIRKLN  338 (340)
Q Consensus       321 ~-----------f~aplP~~~~~~l~~L~  338 (340)
T Consensus       309 ~~~~C~~Ce~~~~~AP~p~~~~~~l~~L~  337 (337)
T TIGR00005       309 EGKKCSECETELFEAPLPADLKELLEALR  337 (337)
T ss_pred             CCCCCCCCCCCHHHCCCCHHHHHHHHHCC
T ss_conf             26505324762110588079999999609