HHsearch alignment for GI: 254780610 and conserved domain: TIGR01621

>TIGR01621 RluA-like pseudouridine synthase Rlu family protein, TIGR01621; InterPro: IPR006508 These sequences represent a clade within the pseudouridine synthase superfamily. The superfamily includes E. coli proteins: RluA, RluB, RluC, RluD, and RsuA. The sequences in this family are most closely related to RluA ; only Neisseria does not appear to have an RluA homolog. It is presumed that these sequences function as pseudouridine synthases, although perhaps with different specificity..
Probab=100.00  E-value=0  Score=298.66  Aligned_cols=196  Identities=32%  Similarity=0.538  Sum_probs=159.3

Q ss_pred             HHHCCCCCEEEEEECCCHHHCCCCCCCCCCC-CHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf             2210144027899624011104567875421-002222221024433444436432444433232405721203578888
Q gi|254780610|r   90 LDILYEDDDIIVINKPAGLVVHPAPGNWTGT-LVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKL  168 (340)
Q Consensus        90 ~~IlyED~~llvinKPaGl~vhp~~~~~~~t-l~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l  168 (340)
T Consensus         2 ~eilf~H~DF~~INK~~giSVHkD~ge---tgL~~~vA~----Q----lgv~~vwLvHRLDK~TSGiLllAlNaesAsel   70 (222)
T TIGR01621         2 LEILFRHSDFVLINKSEGISVHKDDGE---TGLLREVAK----Q----LGVEKVWLVHRLDKVTSGILLLALNAESASEL   70 (222)
T ss_pred             CEEEEECCCEEEEECCCCEEEEECCCC---HHHHHHHHH----H----HCCCCEEEEEECCHHHHHHHHHHHCHHHHHHH
T ss_conf             057753686789867998327725711---138999999----8----18980899870003446899986047899999


Q ss_pred             HHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEE
Q ss_conf             99999721132213344543202433233211001343444332212344455555300001222101125667750012
Q gi|254780610|r  169 SEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLL  248 (340)
Q Consensus       169 ~~~f~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv  248 (340)
T Consensus        71 S~~Fa~----~ki~KtYLAls~~KPkKKQGlI~GdMeksR~g~WKL~~----~-~eNpAiTrF~S~s~-----a~~lRLF  136 (222)
T TIGR01621        71 SRLFAK----KKIKKTYLALSDKKPKKKQGLIIGDMEKSRRGAWKLVR----S-KENPAITRFESVSI-----AEKLRLF  136 (222)
T ss_pred             HHHHHC----CEEEEEEEECCCCCCCCCCCEEECCHHHHHCCCCHHCC----C-CCCCEECCEEEEEE-----CCCCCEE
T ss_conf             876521----70666776313689874442025571242000100027----8-98960111245652-----3888637


Q ss_pred             EEEECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCCCCEEEEECCCC
Q ss_conf             3443115899999999870978604154477554443345701355440798044321000424688976899984997
Q gi|254780610|r  249 KCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIP  327 (340)
Q Consensus       249 ~~~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t~~~~~f~aplP  327 (340)
T Consensus       137 ilkPhTGKTHQlRVAmKSlGSpIlGD~lYg~n~~e---------------sdr~yLhA~~l~FdY--~n~~i~~~c~p~  198 (222)
T TIGR01621       137 ILKPHTGKTHQLRVAMKSLGSPILGDSLYGKNADE---------------SDRTYLHAFKLRFDY--QNEVIEVVCDPK  198 (222)
T ss_pred             EECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCH---------------HHHHHHHHHHHHHHC--CCCEEEEEECCC
T ss_conf             55689996378878887727630056767886421---------------332422222100100--475889986542