>cd02556 PseudoU_synth_RluB PseudoU_synth_RluB: Pseudouridine synthase, Escherichia coli RluB like. This group is comprised of bacterial and eukaryotic proteins similar to E. coli RluB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RluB makes psi2605 in 23S RNA. psi2605 has been detected in eubacteria but, not in eukarya and archea despite the presence of a precursor U at that site.

Probab=99.60 E-value=3.5e-15 Score=110.26 Aligned_cols=143 Identities=22% Similarity=0.273 Sum_probs=92.2 Q ss_pred EEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCC Q ss_conf 78996240111045678754210022222210244334444364324444332324057212035788889999972113 Q gi|254780610|r 99 IIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKS 178 (340) Q Consensus 99 llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~~ 178 (340) T Consensus 2 ~illnKP~G~v~s~~d~~~r~tv~dll~~~---------~~~rl~~vGRLD~ds~GLLLlTnDG~l~~~l~------hP~ 66 (167) T cd02556 2 VLIYHKPEGLICTRKDPKGRPTVFDLLPKL---------GIPRWISVGRLDLNTEGLLLFTNDGELANRLM------HPS 66 (167) T ss_pred EEEEECCCCEEECCCCCCCCCCHHHHCCCC---------CCCCCCCCCCCCCCCCCEEEEECCHHHHHHHC------CCC T ss_conf 899989999897862998897578965533---------55572364138957678599927836757640------987 Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEECHHHHH Q ss_conf 22133445432024332332110013434443322123444555553000012221011256677500123443115899 Q gi|254780610|r 179 TRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTH 258 (340) Q Consensus 179 ~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~TGRtH 258 (340) T Consensus 67 ~~i~k~Y~V~v~~~~~~~~--l~~-l--------~~Gv~i-~~~~~~~~~--v~~~-----~~~~~~~~~~i~l~eGk~r 127 (167) T cd02556 67 NEIEREYAVRVFGQVTDEQ--LKS-L--------KKGVEL-EDGFAGFKS--IQLE-----GGEGKNSWYRVTLREGRNR 127 (167) T ss_pred CCCCEEEEEEECCCCCHHH--HHH-H--------HCCCEE-CCEEEEEEE--EEEE-----CCCCCCEEEEEEEECCCHH T ss_conf 7885799999758999999--999-8--------779787-998840069--9996-----2679967999999769468 Q ss_pred HHHHHHHHHCCEEECCC Q ss_conf 99999987097860415 Q gi|254780610|r 259 QIRVHMAHKGNPLIGDP 275 (340) Q Consensus 259 QIRvhla~lG~PIvGD~ 275 (340) T Consensus 128 qIRrmf~~~g~~V~~L~ 144 (167) T cd02556 128 EVRRLWEAFGLQVSRLI 144 (167) T ss_pred HHHHHHHHCCCEEEEEE T ss_conf 99999998699895899

HHsearch alignment for GI: 254780610 and conserved domain: cd02556