HHsearch alignment for GI: 254780610 and conserved domain: cd02573
>cd02573 PseudoU_synth_EcTruB PseudoU_synth_EcTruB: Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.
Probab=96.61 E-value=0.0038 Score=38.54 Aligned_cols=69 Identities=32% Similarity=0.470 Sum_probs=47.8
Q ss_pred EEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf 27899624011104567875421002222221024433444436432444433232405721203578888999997211
Q gi|254780610|r 98 DIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGK 177 (340)
Q Consensus 98 ~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~ 177 (340)
T Consensus 1 G~l~i~Kp~g~tS~--------~~v~~~k~~~~~--------kKvGH~GTLDP~AtGvL~i~~g~a--TKl~~~~~---- 58 (277)
T cd02573 1 GILLLDKPAGLTSH--------DVVQKVRRLLGT--------KKVGHTGTLDPLATGVLPIALGEA--TKLSQYLL---- 58 (277)
T ss_pred CEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCCEEEEEECHH--HHHHHHHC----
T ss_conf 98999679999989--------999999998588--------855637577976603378998888--70527867----
Q ss_pred CCCEEEEEEEEEE
Q ss_conf 3221334454320
Q gi|254780610|r 178 STRLKRAYYAMVW 190 (340)
Q Consensus 178 ~~~v~K~Y~Aiv~ 190 (340)
T Consensus 59 --~~~K~Y~~~~~ 69 (277)
T cd02573 59 --DADKTYRATVR 69 (277)
T ss_pred --CCCCEEEEEEE
T ss_conf --89917999999