HHsearch alignment for GI: 254780610 and conserved domain: cd02868

>cd02868 PseudoU_synth_hTruB2_like PseudoU_synth_ hTRUB2_Like: Pseudouridine synthase, humanTRUB2_like. This group consists of eukaryotic pseudouridine synthases similar to human TruB pseudouridine synthase homolog 2 (TRUB2). Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi).

Probab=96.88  E-value=0.0016  Score=40.74  Aligned_cols=76  Identities=22%  Similarity=0.255  Sum_probs=45.3

Q ss_pred             EEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCC
Q ss_conf             27899624011104567875421002222221024433444436432444433232405721203578888999997211
Q gi|254780610|r   98 DIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGK  177 (340)
Q Consensus        98 ~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~  177 (340)
T Consensus         1 Gil~v~KP~G~TS~--------~vv~~v~~~l~k~~~~---~kk~g~~GTLDP~AtGvLvi~vG~aT--Kl~~~l~~---   64 (226)
T cd02868           1 GLFAVYKPPGVHWK--------HVRDTIESNLLKYFPE---DKVLVGVHRLDAFSSGVLVLGVNHGN--KLLSHLYS---   64 (226)
T ss_pred             CEEEEECCCCCCHH--------HHHHHHHHHHHHHHCC---CEEEECCCCCCCCCCCCEEEEECHHH--HHHHHHHC---
T ss_conf             98999759999899--------9999999999766417---74696088889756033899988777--25699866---


Q ss_pred             CCCEEEEEEEEEE
Q ss_conf             3221334454320
Q gi|254780610|r  178 STRLKRAYYAMVW  190 (340)
Q Consensus       178 ~~~v~K~Y~Aiv~  190 (340)
T Consensus        65 -~~~~K~Y~~~~~   76 (226)
T cd02868          65 -NHPTRVYTIRGL   76 (226)
T ss_pred             -CCCCEEEEEEEE
T ss_conf             -899769999999