HHsearch alignment for GI: 254780610 and conserved domain: smart00363

>smart00363 S4 S4 RNA-binding domain.
Probab=98.65  E-value=6.3e-08  Score=67.01  Aligned_cols=52  Identities=33%  Similarity=0.416  Sum_probs=47.7

Q ss_pred             CCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEE
Q ss_conf             75789999871768898999999985990499899328675804898899970
Q gi|254780610|r   23 GRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITV   75 (340)
Q Consensus        23 ~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~   75 (340)
T Consensus         1 ~RLD~~l~~~~~-~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~~d~I~~~~   52 (60)
T smart00363        1 RRLDKFLARLGL-APSRSQARKLIEQGRVKVNGKKVTKPSYIVKPGDVISVRG   52 (60)
T ss_pred             CCHHHHHHHCCC-CCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEECC
T ss_conf             978899998387-0479999999984917989999478988989999999988