HHsearch alignment for GI: 254780610 and conserved domain: smart00363
>smart00363 S4 S4 RNA-binding domain.
Probab=98.65 E-value=6.3e-08 Score=67.01 Aligned_cols=52 Identities=33% Similarity=0.416 Sum_probs=47.7
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEE
Q ss_conf 75789999871768898999999985990499899328675804898899970
Q gi|254780610|r 23 GRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITV 75 (340)
Q Consensus 23 ~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~ 75 (340)
T Consensus 1 ~RLD~~l~~~~~-~~Sr~~a~~~I~~g~V~VNg~~v~~~~~~v~~~d~I~~~~ 52 (60)
T smart00363 1 RRLDKFLARLGL-APSRSQARKLIEQGRVKVNGKKVTKPSYIVKPGDVISVRG 52 (60)
T ss_pred CCHHHHHHHCCC-CCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEECC
T ss_conf 978899998387-0479999999984917989999478988989999999988