HHsearch alignment of GI: 254780610 and MMDB domain: 1ksk_A_59-234

>1ksk_A (A:59-234) Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli}
Probab=100.00  E-value=1.6e-42  Score=272.79  Aligned_cols=171  Identities=17%  Similarity=0.132  Sum_probs=129.0

Q ss_pred             CCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf             14402789962401110456787542100222222102443344443643244443323240572120357888899999
Q gi|254780610|r   94 YEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFV  173 (340)
Q Consensus        94 yED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~  173 (340)
                      |||++++|||||+||+||++++.... +.+.+..+.         ..++++|||||++|||||+|||+..++..+..+  
T Consensus         2 Yed~~~ivvnKP~gl~~~~~~~~~~~-~~~~l~~~~---------~~~~~~vhRLD~~TSGlli~ak~~~~~~~~~~~--   69 (176)
T 1ksk_A            2 QHGPRYFXLNKPQGYVCSTDDPDHPT-VLYFLDEPV---------AWKLHAAGRLDIDTTGLVLXTDDGQWSHRITSP--   69 (176)
T ss_dssp             CCCCCEEEEEECTTCBSSSSCSSSCB-GGGGCCCTT---------GGGCEESSCCCTTCEEEEEEESCHHHHHHHHCT--
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCC---------CCCEEEECCCCCCCCCEEEEECCHHHHHHHHHH--
T ss_conf             57857999989998505665554431-000012444---------563656013885557558860586888877554--


Q ss_pred             HHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEEC
Q ss_conf             72113221334454320243323321100134344433221234445555530000122210112566775001234431
Q gi|254780610|r  174 DHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLE  253 (340)
Q Consensus       174 ~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~  253 (340)
                          .+.+.|+|+|+|.|.+......+.....               ...+..+.+.+...+      ....|++++.|.
T Consensus        70 ----~~~~~k~y~~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~------~~~~s~~~~~~~  124 (176)
T 1ksk_A           70 ----RHHCEKTYLVTLESPVADDTAEQFAKGV---------------QLHNEKDLTKPAVLE------VITPTQVRLTIS  124 (176)
T ss_dssp             ----TSCCCEEEEEEESSCCCTTHHHHHHHCC---------------CCTTCSSCCCCCEEE------EEETTEEEEEES
T ss_pred             ----HCCCCEEEEECCCCCCCHHHHHHHHEEE---------------EECCCEEEEEEEEEE------CCCCCEEEEEEC
T ss_conf             ----2388479984467888878977753025---------------638957555346840------379968999963


Q ss_pred             HHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCC
Q ss_conf             15899999999870978604154477554443345701355440798044321000424688
Q gi|254780610|r  254 TGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPR  315 (340)
Q Consensus       254 TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~  315 (340)
                      |||+||||+||+++||||+||.+||......              ..|++||||++-|.++.
T Consensus       125 tGr~HQIR~h~~~~g~pI~gD~~Y~~~~~~~--------------~~~l~l~~~r~l~~~e~  172 (176)
T 1ksk_A          125 EGRYHQVKRXFAAVGNHVVELHRERIGGITL--------------DADLAPGEYRPLTEEEI  172 (176)
T ss_dssp             CCCTTHHHHHHHHTTCCEEEEEEEEETTEEC--------------CTTCCTTCEEECCHHHH
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEEEEECCCCC--------------CCCCCCCCEEECCHHHH
T ss_conf             5983999999998799798999999886504--------------79899975159999999