HHsearch alignment of GI: 254780610 and MMDB domain: 1ksk_A_59-234
>1ksk_A (A:59-234) Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli}
Probab=100.00 E-value=1.6e-42 Score=272.79 Aligned_cols=171 Identities=17% Similarity=0.132 Sum_probs=129.0
Q ss_pred CCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 14402789962401110456787542100222222102443344443643244443323240572120357888899999
Q gi|254780610|r 94 YEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFV 173 (340)
Q Consensus 94 yED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~ 173 (340)
|||++++|||||+||+||++++.... +.+.+..+. ..++++|||||++|||||+|||+..++..+..+
T Consensus 2 Yed~~~ivvnKP~gl~~~~~~~~~~~-~~~~l~~~~---------~~~~~~vhRLD~~TSGlli~ak~~~~~~~~~~~-- 69 (176)
T 1ksk_A 2 QHGPRYFXLNKPQGYVCSTDDPDHPT-VLYFLDEPV---------AWKLHAAGRLDIDTTGLVLXTDDGQWSHRITSP-- 69 (176)
T ss_dssp CCCCCEEEEEECTTCBSSSSCSSSCB-GGGGCCCTT---------GGGCEESSCCCTTCEEEEEEESCHHHHHHHHCT--
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCC---------CCCEEEECCCCCCCCCEEEEECCHHHHHHHHHH--
T ss_conf 57857999989998505665554431-000012444---------563656013885557558860586888877554--
Q ss_pred HHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEEC
Q ss_conf 72113221334454320243323321100134344433221234445555530000122210112566775001234431
Q gi|254780610|r 174 DHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLE 253 (340)
Q Consensus 174 ~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~ 253 (340)
.+.+.|+|+|+|.|.+......+..... ...+..+.+.+...+ ....|++++.|.
T Consensus 70 ----~~~~~k~y~~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~------~~~~s~~~~~~~ 124 (176)
T 1ksk_A 70 ----RHHCEKTYLVTLESPVADDTAEQFAKGV---------------QLHNEKDLTKPAVLE------VITPTQVRLTIS 124 (176)
T ss_dssp ----TSCCCEEEEEEESSCCCTTHHHHHHHCC---------------CCTTCSSCCCCCEEE------EEETTEEEEEES
T ss_pred ----HCCCCEEEEECCCCCCCHHHHHHHHEEE---------------EECCCEEEEEEEEEE------CCCCCEEEEEEC
T ss_conf ----2388479984467888878977753025---------------638957555346840------379968999963
Q ss_pred HHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCC
Q ss_conf 15899999999870978604154477554443345701355440798044321000424688
Q gi|254780610|r 254 TGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPR 315 (340)
Q Consensus 254 TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~ 315 (340)
|||+||||+||+++||||+||.+||...... ..|++||||++-|.++.
T Consensus 125 tGr~HQIR~h~~~~g~pI~gD~~Y~~~~~~~--------------~~~l~l~~~r~l~~~e~ 172 (176)
T 1ksk_A 125 EGRYHQVKRXFAAVGNHVVELHRERIGGITL--------------DADLAPGEYRPLTEEEI 172 (176)
T ss_dssp CCCTTHHHHHHHHTTCCEEEEEEEEETTEEC--------------CTTCCTTCEEECCHHHH
T ss_pred CCCHHHHHHHHHHCCCEEEEEEEEEECCCCC--------------CCCCCCCCEEECCHHHH
T ss_conf 5983999999998799798999999886504--------------79899975159999999