HHsearch alignment of GI: 254780610 and MMDB domain: 1p9k_A_

>1p9k_A (A:) ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli K12}

Probab=98.92  E-value=2e-10  Score=81.47  Aligned_cols=71  Identities=17%  Similarity=0.131  Sum_probs=62.1

Q ss_pred             CCHHCCCEEEEEECHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEE
Q ss_conf             511016249999571136875789999871768898999999985990499899328675804898899970
Q gi|254780610|r    4 TLDNCSSIKISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITV   75 (340)
Q Consensus         4 ~~~~~~~~~~~~V~~~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~   75 (340)
                      +|.+--......+.....++|||+||.+... ..||++++++|..|.|+|||++++++++.|.+||.|.+..
T Consensus         2 ~m~~~~~~~~~~~~~~~~~~RLd~~L~~~~~-~~SR~~a~~~I~~G~V~VNg~~v~~~~~~v~~gd~I~i~~   72 (79)
T 1p9k_A            2 SMIHRMSNMATFSLGKHPHVELCDLLKLEGW-SESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAG   72 (79)
T ss_dssp             CCCCSSCCCCEEECCSCSCCCHHHHHHHHTS-CSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEETT
T ss_pred             CHHHCCCCCCEEECCCCCCEEHHHHHHHCCC-CCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEECC
T ss_conf             5100014771386499971979999987788-3689999999984997989999277887989999999999