HHsearch alignment of GI: 254780610 and MMDB domain: 1sgv_A_1-60_206-232

>1sgv_A (A:1-60,A:206-232) TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, protein structure initiative; 1.90A {Mycobacterium tuberculosis H37RV}

Probab=94.64  E-value=0.032  Score=32.60  Aligned_cols=55  Identities=31%  Similarity=0.438  Sum_probs=37.8

Q ss_pred             CCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHH
Q ss_conf             14402789962401110456787542100222222102443344443643244443323240572120357
Q gi|254780610|r   94 YEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLA  164 (340)
Q Consensus        94 yED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a  164 (340)
                      |.-+.++++|||.|+.+|        .+++.+...+..        .+.+-..-||-..||+|+++-+...
T Consensus         3 ~~~~Gil~idKP~G~TS~--------~vv~~iKk~l~~--------kKVGH~GTLDP~AtGvLiv~iG~aT   57 (87)
T 1sgv_A            3 ATGPGIVVIDKPAGMTSH--------DVVGRCRRIFAT--------RRVGHAGTLDPMATGVLVIGIERAT   57 (87)
T ss_dssp             CCCSEEEEEEECTTCCHH--------HHHHHHHHHTTC--------SCEEESSCCCTTCEEEEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCEEEEEEEECHHH
T ss_conf             889889999769989989--------999999998488--------8556387889736423999989676