HHsearch alignment of GI: 254780610 and MMDB domain: 2apo_A_51-266
>2apo_A (A:51-266) Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii}
Probab=96.87 E-value=0.0007 Score=42.52 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=52.9
Q ss_pred CCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 14402789962401110456787542100222222102443344443643244443323240572120357888899999
Q gi|254780610|r 94 YEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFV 173 (340)
Q Consensus 94 yED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~ 173 (340)
|--+.|+++|||+|+.+|. +++.+.+.+.. .+.+-...||-..||+|+++-+... .+...|
T Consensus 13 ~~~~G~l~i~KP~g~tS~~--------vv~~~k~~~~~--------~kvgh~GtLDp~a~GvLiv~ig~~T--kl~~~~- 73 (216)
T 2apo_A 13 LIKYGVVVVDKPRGPTSHE--------VSTWVKKILNL--------DKAGHGGTLDPKVTGVLPVALERAT--KTIPMW- 73 (216)
T ss_dssp HHHTEEEEEEECSSSCHHH--------HHHHHHHHTTC--------SCEEESSCCCTTCEEEEEEEEGGGG--GGGGGT-
T ss_pred HHCCCEEEEECCCCCCHHH--------HHHHHHHHHCC--------CCCCCCCCCCCCCCCCHHHEECHHH--HHHHHH-
T ss_conf 8549989997999899899--------99999998487--------7357787789634365532118653--221775-
Q ss_pred HHCCCCCEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 72113221334454320243323321100
Q gi|254780610|r 174 DHGKSTRLKRAYYAMVWGIPLPDSGIINA 202 (340)
Q Consensus 174 ~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~ 202 (340)
..-.|+|.|.+.=-...++..++.
T Consensus 74 -----~~~~K~Y~~~~~lG~~Tdt~di~~ 97 (216)
T 2apo_A 74 -----HIPPKEYVCLMHLHRDASEEDILR 97 (216)
T ss_dssp -----TSSCEEEEEEEEESSCCCHHHHHH
T ss_pred -----CCCCCEEEEEEEEEECCCCCHHHH
T ss_conf -----058827999999831243214999