HHsearch alignment of GI: 254780610 and MMDB domain: 2cqj_A_

>2cqj_A (A:) BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.80  E-value=1.4e-05  Score=52.59  Aligned_cols=55  Identities=13%  Similarity=0.079  Sum_probs=46.3

Q ss_pred             HHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCC--CEEEEE
Q ss_conf             13687578999987176889899999998599049989932867580489--889997
Q gi|254780610|r   19 STAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPG--DSFLIT   74 (340)
Q Consensus        19 ~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~g--d~I~i~   74 (340)
                      +...+|||.+|.+.-. .-|+.+++++|..|.|+|||++++.|++.|..|  |.|.+.
T Consensus         4 ~~lerRLd~~l~~~g~-a~s~~~Ar~lI~~G~V~Vng~~v~~Ps~~v~~~~~d~I~~~   60 (71)
T 2cqj_A            4 GSSGRRLPTVLLKLRM-AQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWV   60 (71)
T ss_dssp             SCCEEEHHHHHHHTTC-SSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEES
T ss_pred             HHHHCCHHHHHHHHCC-CCCHHHHHHHHHHCEEEECCEEECCCCEEECCCCCCEEEEE
T ss_conf             3444126899998055-27899999999849899899995569858358998869984