HHsearch alignment of GI: 254780610 and MMDB domain: 2i82_A_
>2i82_A (A:) Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=100.00 E-value=0 Score=344.32 Aligned_cols=208 Identities=31% Similarity=0.439 Sum_probs=172.1
Q ss_pred HHHHHHCCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH
Q ss_conf 22222101440278996240111045678754210022222210244334444364324444332324057212035788
Q gi|254780610|r 87 NIPLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQ 166 (340)
Q Consensus 87 ~~~~~IlyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~ 166 (340)
..+++|||||++|+|+|||+||+||++++....++...+...... ++++|||||++|||+||+||+.++++
T Consensus 9 ~~~~~Ii~ed~~~ivinKP~gi~~~~~~~~~~~~~~~~~~~~~~~---------~l~~vhRLD~~TSGllllak~~~~~~ 79 (217)
T 2i82_A 9 EPWLVILYQDDHIXVVNKPSGLLSVPGRLEEHKDSVXTRIQRDYP---------QAESVHRLDXATSGVIVVALTKAAER 79 (217)
T ss_dssp SSSCCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHHHHCT---------TCEESSCCCTTCEEEEEEESSHHHHH
T ss_pred CCCCEEEEECCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCC---------CCCCCCCCCCCCCEEEEEEECHHHHH
T ss_conf 999529997998999999999825799887760389997644103---------32223455542101589860317777
Q ss_pred HHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCC
Q ss_conf 88999997211322133445432024332332110013434443322123444555553000012221011256677500
Q gi|254780610|r 167 KLSEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVS 246 (340)
Q Consensus 167 ~l~~~f~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~s 246 (340)
.|+++|. .+.+.|+|+|++.|.+...++.+..+............ ......++.+.+.|.++. ....+|
T Consensus 80 ~l~~~~~----~~~~~k~Y~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~s 148 (217)
T 2i82_A 80 ELKRQFR----EREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQK--VCYETGKPAQTEYEVVEY-----AADNTA 148 (217)
T ss_dssp HHHHHHH----TTCSEEEEEEEEESCCSSSEEEEECCEEECGGGTTCEE--ECTTTCBCCEEEEEEEEE-----ETTTEE
T ss_pred HHHHHHH----HCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCE--ECCCCCCCCCCEECCCCC-----CCCCCE
T ss_conf 8898765----14010368988615446664067410123224332200--012247630010101111-----233104
Q ss_pred EEEEEECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCCCCEEEEECCC
Q ss_conf 12344311589999999987097860415447755444334570135544079804432100042468897689998499
Q gi|254780610|r 247 LLKCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPI 326 (340)
Q Consensus 247 lv~~~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t~~~~~f~apl 326 (340)
+++|+|.|||+||||+||+++||||+||.+||..... ...+|++|||++|+|+||.|||.+.|+||+
T Consensus 149 ~~~~~~~TGr~HQIR~h~a~lg~PIlgD~~Yg~~~~~-------------~~~~~~~Lha~~l~f~~p~~ge~~~~~~p~ 215 (217)
T 2i82_A 149 RVVLKPITGRSHQLRVHXLALGHPILGDRFYASPEAR-------------AXAPRLLLHAEXLTITHPAYGNSXTFKAPA 215 (217)
T ss_dssp EEEEEESSCCTTHHHHHHHHTTCCBTTCTTTSCHHHH-------------HTCSSCCEEEEEEEEECTTTCCEEEEECCC
T ss_pred EEEEEECCCCHHHHHHHHHHHCCEEECCCCCCCHHHC-------------CCCCCHHHHCCCCEEECCCCCCEEEEECCC
T ss_conf 7889850262378999999719768167676885563-------------688466676276788998999889997899
Q ss_pred C
Q ss_conf 7
Q gi|254780610|r 327 P 327 (340)
Q Consensus 327 P 327 (340)
|
T Consensus 216 P 216 (217)
T 2i82_A 216 D 216 (217)
T ss_dssp C
T ss_pred C
T ss_conf 9