HHsearch results for GI: 254780610 and protein with PDBid: 1c05_A

>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=98.09  E-value=4.6e-06  Score=54.64  Aligned_cols=53  Identities=23%  Similarity=0.386  Sum_probs=46.7

Q ss_pred             CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEE
Q ss_conf             687578999987176889899999998599049989932867580489889997
Q gi|254780610|r   21 AEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLIT   74 (340)
Q Consensus        21 ~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~   74 (340)
                      -++|||..+-+. .-..|+.++++++..|.|.|||+++..|++.+++||.|.+.
T Consensus        49 LE~RLDnvvyR~-gfa~t~~~ARQlv~Hghi~VNgk~v~ipS~~vk~gD~I~~~  101 (159)
T 1c05_A           49 LESRLDNLVYRL-GLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVR  101 (159)
T ss_dssp             HHHBHHHHHHHT-TSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEEC
T ss_pred             HHHHHHHHHHCC-CCCCCHHHHHHHHHHCCEEECCEEEEECCEECCCCCEEEEC
T ss_conf             998656772047-75279999999998037070247985256774899898732