HHsearch results for GI: 254780610 and protein with PDBid: 1c05_A
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=98.09 E-value=4.6e-06 Score=54.64 Aligned_cols=53 Identities=23% Similarity=0.386 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEE
Q ss_conf 687578999987176889899999998599049989932867580489889997
Q gi|254780610|r 21 AEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLIT 74 (340)
Q Consensus 21 ~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~ 74 (340)
-++|||..+-+. .-..|+.++++++..|.|.|||+++..|++.+++||.|.+.
T Consensus 49 LE~RLDnvvyR~-gfa~t~~~ARQlv~Hghi~VNgk~v~ipS~~vk~gD~I~~~ 101 (159)
T 1c05_A 49 LESRLDNLVYRL-GLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVR 101 (159)
T ss_dssp HHHBHHHHHHHT-TSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEEC
T ss_pred HHHHHHHHHHCC-CCCCCHHHHHHHHHHCCEEECCEEEEECCEECCCCCEEEEC
T ss_conf 998656772047-75279999999998037070247985256774899898732