HHsearch results for GI: 254780610 and protein with PDBid: 1k8w_A
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=97.41 E-value=0.0002 Score=44.86 Aligned_cols=70 Identities=19% Similarity=0.398 Sum_probs=49.6
Q ss_pred CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r 97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG 176 (340)
Q Consensus 97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~ 176 (340)
+.+++||||+|+.+| -++..+...+.. .+.|-...||--.||||++|-+..+ .+...|..
T Consensus 25 nG~l~i~Kp~g~tS~--------~~v~~~r~~l~~--------kKvGH~GTLDP~AtGvL~v~~G~aT--Kl~~~~~~-- 84 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSN--------DALQKVKRIYNA--------NRAGHTGALDPLATGMLPICLGEAT--KFSQYLLD-- 84 (327)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHTTC--------SCEEESSCCCTTCEEEEEEEEGGGG--GGTHHHHT--
T ss_pred CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHCC--
T ss_conf 469999689989989--------999999998589--------8587786579856013999978787--48888778--
Q ss_pred CCCCEEEEEEEEEE
Q ss_conf 13221334454320
Q gi|254780610|r 177 KSTRLKRAYYAMVW 190 (340)
Q Consensus 177 ~~~~v~K~Y~Aiv~ 190 (340)
-.|+|.|.+.
T Consensus 85 ----~~K~Y~~~~~ 94 (327)
T 1k8w_A 85 ----SDKRYRVIAR 94 (327)
T ss_dssp ----SCEEEEEEEE
T ss_pred ----CCCCEEEEEE
T ss_conf ----9873289999