HHsearch results for GI: 254780610 and protein with PDBid: 1k8w_A

>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=97.41  E-value=0.0002  Score=44.86  Aligned_cols=70  Identities=19%  Similarity=0.398  Sum_probs=49.6

Q ss_pred             CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r   97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG  176 (340)
Q Consensus        97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~  176 (340)
                      +.+++||||+|+.+|        -++..+...+..        .+.|-...||--.||||++|-+..+  .+...|..  
T Consensus        25 nG~l~i~Kp~g~tS~--------~~v~~~r~~l~~--------kKvGH~GTLDP~AtGvL~v~~G~aT--Kl~~~~~~--   84 (327)
T 1k8w_A           25 NGVLLLDKPQGMSSN--------DALQKVKRIYNA--------NRAGHTGALDPLATGMLPICLGEAT--KFSQYLLD--   84 (327)
T ss_dssp             CEEEEEEECTTCCHH--------HHHHHHHHHTTC--------SCEEESSCCCTTCEEEEEEEEGGGG--GGTHHHHT--
T ss_pred             CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHCC--
T ss_conf             469999689989989--------999999998589--------8587786579856013999978787--48888778--


Q ss_pred             CCCCEEEEEEEEEE
Q ss_conf             13221334454320
Q gi|254780610|r  177 KSTRLKRAYYAMVW  190 (340)
Q Consensus       177 ~~~~v~K~Y~Aiv~  190 (340)
                          -.|+|.|.+.
T Consensus        85 ----~~K~Y~~~~~   94 (327)
T 1k8w_A           85 ----SDKRYRVIAR   94 (327)
T ss_dssp             ----SCEEEEEEEE
T ss_pred             ----CCCCEEEEEE
T ss_conf             ----9873289999