HHsearch results for GI: 254780610 and protein with PDBid: 1sgv_A
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, protein structure initiative; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: b.122.1.1 d.265.1.2
Probab=97.15 E-value=0.00026 Score=44.17 Aligned_cols=71 Identities=28% Similarity=0.415 Sum_probs=48.9
Q ss_pred CCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 40278996240111045678754210022222210244334444364324444332324057212035788889999972
Q gi|254780610|r 96 DDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDH 175 (340)
Q Consensus 96 D~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~ 175 (340)
+..+++||||.|+.+| .+++.+...+.. .+.|-..+||-..||+|+++-+..+ .+...|.
T Consensus 5 ~~G~l~i~KP~G~TS~--------~~v~~vk~~~~~--------~KvGH~GTLDP~AsGvL~i~vG~aT--Kl~~~~~-- 64 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSH--------DVVGRCRRIFAT--------RRVGHAGTLDPMATGVLVIGIERAT--KILGLLT-- 64 (316)
T ss_dssp CSEEEEEEECTTCCHH--------HHHHHHHHHTTC--------SCEEESSCCCTTCEEEEEEEEGGGG--GGGGGTT--
T ss_pred CCEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHH--
T ss_conf 9889999779999989--------999999998587--------8456487789756334999978788--4779985--
Q ss_pred CCCCCEEEEEEEEEE
Q ss_conf 113221334454320
Q gi|254780610|r 176 GKSTRLKRAYYAMVW 190 (340)
Q Consensus 176 ~~~~~v~K~Y~Aiv~ 190 (340)
.-.|+|.|.+.
T Consensus 65 ----~~~K~Y~~~~~ 75 (316)
T 1sgv_A 65 ----AAPKSYAATIR 75 (316)
T ss_dssp ----TSCEEEEEEEE
T ss_pred ----CCCEEEEEEEE
T ss_conf ----18648999999