HHsearch results for GI: 254780610 and protein with PDBid: 1v9f_A
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=100.00 E-value=0 Score=556.10 Aligned_cols=307 Identities=40% Similarity=0.643 Sum_probs=262.3
Q ss_pred EEEECHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCHHCCHHHHHHHHHH
Q ss_conf 99957113687578999987176889899999998599049989932867580489889997056011110233222221
Q gi|254780610|r 13 ISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNIAQENIPLDI 92 (340)
Q Consensus 13 ~~~V~~~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~~~~~~~~~~~~I 92 (340)
+.+|+++++|+|||+||++.|+ ++||++++++|++|.|+|||+++++++++|..||.|.+..+........+...+++|
T Consensus 7 t~tV~~~~~G~RLD~~L~~~~~-~~sr~~i~k~i~~g~V~vNg~~~~k~~~~l~~gD~I~i~~~~~~~~~~~~~~~~~~i 85 (325)
T 1v9f_A 7 TATVSENQLGQRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDI 85 (325)
T ss_dssp ----------------------------------------------------------------------CCCCCCCCCE
T ss_pred EEEECCCCCCCHHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 9998977588679999998668-779999999998699899999937854165699999982676665446755688607
Q ss_pred CCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 01440278996240111045678754210022222210244334444364324444332324057212035788889999
Q gi|254780610|r 93 LYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQF 172 (340)
Q Consensus 93 lyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f 172 (340)
||||++|+|||||+||+|||+++...+|+.+.+..++... ....++++||||||+||||||||||+.+++.|+++|
T Consensus 86 lyed~~~ivvnKP~Gl~~~p~~~~~~~tl~~~~~~~~~~~----~~~~~~~~vHRLDr~TSGlll~Ak~~~~~~~l~~~f 161 (325)
T 1v9f_A 86 VYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESL 161 (325)
T ss_dssp EEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGG----GGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHH
T ss_pred EEEECCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH----CCCCCCEEECCCCCCCCCEEEEEECCHHHHHHHHHH
T ss_conf 9960889999899987258999988874999999863431----377652166578988742699740005789998876
Q ss_pred HHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEE
Q ss_conf 97211322133445432024332332110013434443322123444555553000012221011256677500123443
Q gi|254780610|r 173 VDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHL 252 (340)
Q Consensus 173 ~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~ 252 (340)
. ++.|.|+|+|+|.|.++. .+.+..++..+......+.+ .+.|++|.|+|++++.. ..+|||+|+|
T Consensus 162 ~----~~~v~K~Y~A~v~G~~~~-~~~~~~~~~~~~~~~~~~~v----~~~gk~a~T~~~~~~~~-----~~~slv~~~~ 227 (325)
T 1v9f_A 162 Q----RREITREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHF-----RVHTRLRLRL 227 (325)
T ss_dssp H----TTCSEEEEEEEEESCCCC-CEEEECCEEECSSCTTCEEE----CTTSBCCEEEEEEEEEC-----SSEEEEEEEE
T ss_pred H----HCEEEEEEEEEEECCCCC-CCCEECCCCCCCCCCCEEEE----CCCCEEEEEEEEEEEEC-----CCCEEEEEEE
T ss_conf 4----070205899999764276-65050443237777627997----88980358999974423-----8844689997
Q ss_pred CHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCCCCEEEEECCCCHHHHH
Q ss_conf 11589999999987097860415447755444334570135544079804432100042468897689998499789999
Q gi|254780610|r 253 ETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIPEDMLT 332 (340)
Q Consensus 253 ~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t~~~~~f~aplP~~~~~ 332 (340)
+||||||||+||+++||||+||.+||+....... ..........+++||||||++|+|+||.||+.++|+||+|+||++
T Consensus 228 ~TGRtHQIRvHla~lG~PIlGD~~YG~~~~~~~~-~~~~~~~~~~~~~r~~LHA~~L~f~hP~t~~~~~~~aplP~df~~ 306 (325)
T 1v9f_A 228 ETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKG-ASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 306 (325)
T ss_dssp SCCCTTHHHHHHHHTTCCBTTCTTTTCCCCCCTT-CCHHHHHHHHHCCSCSEEEEEEEEECTTTCCEEEEECCCCHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCC-CHHHHHHHHHCCCCHHHHCCCCEEECCCCCCEEEEEECCHHHHHH
T ss_conf 8888679999999859937586134876556543-205667665058641253480696669999889999179799999
Q ss_pred HHHHHHC
Q ss_conf 9998851
Q gi|254780610|r 333 VIRKLNE 339 (340)
Q Consensus 333 ~l~~L~~ 339 (340)
+|+.|+.
T Consensus 307 ~l~~L~~ 313 (325)
T 1v9f_A 307 LIEVMRA 313 (325)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999741