HHsearch results for GI: 254780610 and protein with PDBid: 1vio_A

>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=100.00  E-value=0  Score=293.74  Aligned_cols=206  Identities=20%  Similarity=0.292  Sum_probs=156.2

Q ss_pred             CCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCHHCCHHHHHHHHHHCCCCCEEEE
Q ss_conf             87578999987176889899999998599049989932867580489889997056011110233222221014402789
Q gi|254780610|r   22 EGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDIIV  101 (340)
Q Consensus        22 g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~~~~~~~~~~~~IlyED~~llv  101 (340)
                      .+|||+||+..+  .+||++++++|++|+|+|||++++.+++.|..||.|.+...             .-++|||++++|
T Consensus         2 ~mRLdkfLs~~~--~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~~d~V~~~~~-------------~i~~~e~~~~~v   66 (243)
T 1vio_A            2 SLRLDKFIAENV--GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDE-------------LLTWIEEGQYFM   66 (243)
T ss_dssp             CEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTE-------------ECCSSCCCCEEE
T ss_pred             CHHHHHHHHHCC--CCCHHHHHHHHHCCEEEECCEEECCCCEECCCCCEEEECCC-------------EEEEECCCEEEE
T ss_conf             568999999877--85899999999789099999990549968488787995486-------------577603514999


Q ss_pred             EECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCE
Q ss_conf             96240111045678754210022222210244334444364324444332324057212035788889999972113221
Q gi|254780610|r  102 INKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRL  181 (340)
Q Consensus       102 inKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~~~~v  181 (340)
                      +|||+|++||+++.. ..|+.+.+....         ..++++|||||++||||||||++..++..+..+      ...+
T Consensus        67 vnKP~G~~~~~~~~~-~~~v~~~~~~~~---------~~~~~~VhRLDr~TSGlll~ak~~~~~~~~~~~------~~~~  130 (243)
T 1vio_A           67 LNKPQGCVCSNDDGD-YPTIYQFFDYPL---------AGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSP------KHHC  130 (243)
T ss_dssp             EEECTTCBSSCCC---CCBGGGGSCTTG---------GGGCEESSCCCTTCEEEEEEESCHHHHHHHHCT------TSCC
T ss_pred             EECCCCCCCCCCCCC-CEEEEEECCCCC---------CCCEEEEEECCCCCCCCEEEECCHHHHHHHHHH------CCCC
T ss_conf             977998511123322-204876124455---------785635444588878706550284663322112------0387


Q ss_pred             EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEECHHHHHHHH
Q ss_conf             33445432024332332110013434443322123444555553000012221011256677500123443115899999
Q gi|254780610|r  182 KRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIR  261 (340)
Q Consensus       182 ~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~TGRtHQIR  261 (340)
                      .|+|.+.|.|.+..+.  ++         ..++.+    ...|+.+.|.+..++....      +.++|.|+||||||||
T Consensus       131 ~~~y~v~v~~~~~~~~--~~---------~l~~~v----~~~g~~~~~~~~~~~~~~~------~~l~v~l~TGRtHQIR  189 (243)
T 1vio_A          131 EKTYLVTLADPVEENY--SA---------ACAEGI----LLRGEKEPTKPAKLEILDD------YNVNLTISEGRYHQVK  189 (243)
T ss_dssp             CEEEEEEESSCCCTTH--HH---------HHHHCC----CCTTCSSCCCCCEEEECSS------SEEEEEESCCCTTHHH
T ss_pred             EEEEEEEECCCCCHHH--HH---------HHHCCE----EECCCCCEEEEEEEECCCC------CEEEEECCCCCCHHHH
T ss_conf             2899999953551668--99---------985545----6079022068887631688------3699985789645999


Q ss_pred             HHHHHHCCEEECCCC--CCC
Q ss_conf             999870978604154--477
Q gi|254780610|r  262 VHMAHKGNPLIGDPL--YGK  279 (340)
Q Consensus       262 vhla~lG~PIvGD~~--YG~  279 (340)
                      +||+++||||+|+..  ||+
T Consensus       190 ~hl~~lG~PIi~l~Ri~~g~  209 (243)
T 1vio_A          190 RMFAALGNKVVGLHRWKIGD  209 (243)
T ss_dssp             HHHHHTTCCEEEEEEEEETT
T ss_pred             HHHHHCCCEEEEEEEEEECC
T ss_conf             99998699697989999897