HHsearch results for GI: 254780610 and protein with PDBid: 2i82_A
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=100.00 E-value=0 Score=382.58 Aligned_cols=206 Identities=33% Similarity=0.470 Sum_probs=162.7
Q ss_pred HHHHCCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf 22210144027899624011104567875421002222221024433444436432444433232405721203578888
Q gi|254780610|r 89 PLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKL 168 (340)
Q Consensus 89 ~~~IlyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l 168 (340)
+++|||||++|+|||||+||+|||++.....+....... . ....+++|||||++||||+|+|||+++++.|
T Consensus 11 ~l~Ilyed~~~lvvnKP~gl~~~~~~~~~~~~~~~~~~~---~------~~~~~~~vhRLD~~TSGlvl~Ak~~~~~~~l 81 (217)
T 2i82_A 11 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ---R------DYPQAESVHRLDMATSGVIVVALTKAAEREL 81 (217)
T ss_dssp SCCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHH---H------HCTTCEESSCCCTTCEEEEEEESSHHHHHHH
T ss_pred CCEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH---H------CCCCCCCCCCCCCCCEEEEEEEECHHHHHHH
T ss_conf 952999789999999999982569988776048999875---0------3786431545787521479995020557899
Q ss_pred HHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEE
Q ss_conf 99999721132213344543202433233211001343444332212344455555300001222101125667750012
Q gi|254780610|r 169 SEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLL 248 (340)
Q Consensus 169 ~~~f~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv 248 (340)
+++|. ++.+.|+|+|+|.|.+.++.+.+..++..+...+..... .....++.+.+.+... .....+||+
T Consensus 82 ~~~~~----~~~v~K~Y~a~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~sl~ 150 (217)
T 2i82_A 82 KRQFR----EREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV--CYETGKPAQTEYEVVE-----YAADNTARV 150 (217)
T ss_dssp HHHHH----TTCSEEEEEEEEESCCSSSEEEEECCEEECGGGTTCEEE--CTTTCBCCEEEEEEEE-----EETTTEEEE
T ss_pred HHHHH----CCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCEEE--EECCCCCCCEEEEEEE-----EECCCCEEE
T ss_conf 99986----593515997875143356643697545201456741356--5037863315899987-----511331477
Q ss_pred EEEECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCCCCEEEEECCCC
Q ss_conf 3443115899999999870978604154477554443345701355440798044321000424688976899984997
Q gi|254780610|r 249 KCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIP 327 (340)
Q Consensus 249 ~~~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t~~~~~f~aplP 327 (340)
+|+|+||||||||+|||++|||||||.+||+... ....+||+|||++|+|+||.||+.++|+||+|
T Consensus 151 ~~~~~TGR~HQIRvHla~ig~PIvGD~~Yg~~~~-------------~~~~~r~~LHa~~l~f~~P~t~~~~~~~aP~~ 216 (217)
T 2i82_A 151 VLKPITGRSHQLRVHMLALGHPILGDRFYASPEA-------------RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 216 (217)
T ss_dssp EEEESSCCTTHHHHHHHHTTCCBTTCTTTSCHHH-------------HHTCSSCCEEEEEEEEECTTTCCEEEEECCCC
T ss_pred EEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHH-------------CCCCCCHHHHCCCCEEECCCCCCEEEEECCCC
T ss_conf 9998989847999999976982617767688546-------------36996744752678879989998899985899