HHsearch results for GI: 254780610 and protein with PDBid: 2oml_A
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=100.00 E-value=9e-36 Score=231.65 Aligned_cols=161 Identities=24% Similarity=0.264 Sum_probs=107.8
Q ss_pred CCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 44027899624011104567875421002222221024433444436432444433232405721203578888999997
Q gi|254780610|r 95 EDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVD 174 (340)
Q Consensus 95 ED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~ 174 (340)
++..++|+|||+|++||++......|+.+.+. ..+.++|||||++||||||||++..++..|..
T Consensus 9 ~~~~~iivnKP~G~~~~~~~~~~~~~l~~~l~------------~~~~~~vhRLDr~TSGLll~a~~~~~~~~l~~---- 72 (189)
T 2oml_A 9 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP------------VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ---- 72 (189)
T ss_dssp CCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC------------CSSCEESSCCCTTCEEEEEEESCHHHHHHHHS----
T ss_pred CCCEEEEEECCCCCEECCCCCCCCCCHHHHCC------------CCCCEECCCCCCCCCCCEEEECCCHHHHHHCC----
T ss_conf 99889999999983831779999976889667------------24753763458777880898337303555425----
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEE
Q ss_conf 211322133445432024332332110--013434443322123444555553000012221011256677500123443
Q gi|254780610|r 175 HGKSTRLKRAYYAMVWGIPLPDSGIIN--APLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHL 252 (340)
Q Consensus 175 ~~~~~~v~K~Y~Aiv~G~~~~~~g~i~--~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~ 252 (340)
+.+.+.|+|+|+|.|.+.++....- .....+... ........+......+.+.+.. ......+|+++|.|
T Consensus 73 --~~~~i~K~Y~a~v~g~~~~~~~~~l~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~l~v~l 144 (189)
T 2oml_A 73 --PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPT-LPAGAELVDEPAWLWPRNPPIR-----ERKSIPTSWLKITL 144 (189)
T ss_dssp --TTSCCCEEEEEEEESCCCHHHHHHHHHCCEETTEEC-CCCEEEEECCCTTCCCCSSCCC------CTTSCEEEEEEEE
T ss_pred --CCCCEEEEEEEEEECCCCHHHHHHHHCCCCCCCCCC-CCEEEEEECCCCCCCEEEEEEE-----EEECCCCEEEEEEE
T ss_conf --765367899999953799899999864983468622-3206899535665220466899-----86236514899995
Q ss_pred CHHHHHHHHHHHHHHCCEEECCCCCCC
Q ss_conf 115899999999870978604154477
Q gi|254780610|r 253 ETGRTHQIRVHMAHKGNPLIGDPLYGK 279 (340)
Q Consensus 253 ~TGRtHQIRvhla~lG~PIvGD~~YG~ 279 (340)
.||||||||+||+++||||+++..|..
T Consensus 145 ~tGR~HQIR~hl~~iG~pI~~l~R~~~ 171 (189)
T 2oml_A 145 YEGRNRQVRRMTAHVGFPTLRLIRYAM 171 (189)
T ss_dssp SCCCTTHHHHHHHHTTCCEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf 158749999999986997978899999