Query gi|254780610|ref|YP_003065023.1| RNA-pseudouridylate synthase protein, ribosomal large subunit D [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 340
No_of_seqs 150 out of 5691
Neff 7.1
Searched_HMMs 23785
Date Tue May 31 18:14:31 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780610.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v9f_A Ribosomal large subunit 100.0 0 0 556.1 15.8 307 13-339 7-313 (325)
2 1v9k_A Ribosomal large subunit 100.0 0 0 430.4 14.5 224 91-339 3-226 (228)
3 2i82_A Ribosomal large subunit 100.0 0 0 382.6 12.1 206 89-327 11-216 (217)
4 1vio_A Ribosomal small subunit 100.0 0 0 293.7 13.7 206 22-279 2-209 (243)
5 1ksk_A Ribosomal small subunit 100.0 4.2E-45 0 287.3 14.0 207 21-279 2-210 (234)
6 2oml_A Ribosomal large subunit 100.0 9E-36 3.8E-40 231.7 7.9 161 95-279 9-171 (189)
7 2olw_A Ribosomal large subunit 100.0 2.9E-35 1.2E-39 228.6 8.1 162 93-278 35-198 (217)
8 3dh3_A Ribosomal large subunit 100.0 1.4E-32 5.7E-37 212.7 12.0 201 21-276 5-205 (290)
9 2gml_A Ribosomal large subunit 99.8 1.6E-21 6.9E-26 146.7 7.3 136 99-275 16-151 (237)
10 2k6p_A Uncharacterized protein 99.6 1.5E-16 6.1E-21 117.2 0.0 87 23-111 1-88 (92)
11 1dm9_A Hypothetical 15.5 KD pr 98.5 2.9E-07 1.2E-11 61.8 7.4 56 19-76 5-60 (133)
12 1p9k_A ORF, hypothetical prote 98.4 3.8E-08 1.6E-12 67.0 0.9 68 5-74 4-71 (79)
13 2vqe_D 30S ribosomal protein S 98.1 5.1E-06 2.1E-10 54.4 6.3 54 21-75 97-150 (209)
14 1c05_A Ribosomal protein S4 de 98.1 4.6E-06 1.9E-10 54.6 5.8 53 21-74 49-101 (159)
15 3ofo_D 30S ribosomal protein S 97.9 6.1E-06 2.6E-10 53.9 3.4 54 21-75 93-146 (205)
16 3bbn_D Ribosomal protein S4; s 97.9 4.8E-06 2E-10 54.5 2.5 53 21-74 87-139 (201)
17 3hp7_A Hemolysin, putative; st 97.6 4.2E-05 1.8E-09 48.9 3.5 52 22-74 6-59 (291)
18 2cqj_A BRMS2, U3 small nucleol 97.5 5.2E-05 2.2E-09 48.3 3.3 56 18-74 3-60 (71)
19 1k8w_A TRNA pseudouridine synt 97.4 0.0002 8.4E-09 44.9 5.3 70 97-190 25-94 (327)
20 3jyv_D 40S ribosomal protein S 97.2 0.00011 4.5E-09 46.5 2.1 57 19-76 98-154 (158)
21 1r3e_A TRNA pseudouridine synt 97.2 0.00024 9.9E-09 44.4 3.6 70 97-190 3-72 (309)
22 1sgv_A TRNA pseudouridine synt 97.2 0.00026 1.1E-08 44.2 3.6 71 96-190 5-75 (316)
23 1s1h_D 40S ribosomal protein S 96.9 0.00088 3.7E-08 41.0 4.5 57 18-75 84-140 (179)
24 2apo_A Probable tRNA pseudouri 96.3 0.0015 6.3E-08 39.6 2.4 86 93-202 62-147 (357)
25 2aus_C Pseudouridine synthase; 96.3 0.0022 9.2E-08 38.7 3.2 73 94-190 43-115 (334)
26 1h3f_A Tyrosyl-tRNA synthetase 94.6 0.14 5.8E-06 28.0 7.4 19 155-173 190-208 (432)
27 3kbg_A 30S ribosomal protein S 94.2 0.083 3.5E-06 29.3 5.5 70 22-103 7-76 (213)
28 2jan_A Tyrosyl-tRNA synthetase 92.2 0.12 5.1E-06 28.2 3.9 16 38-53 20-35 (432)
29 1jil_A Tyrrs, tyrosyl-tRNA syn 89.4 0.055 2.3E-06 30.3 0.0 15 39-53 21-35 (420)
30 2ts1_A Tyrosyl-tRNA synthetase 88.8 0.065 2.7E-06 29.9 0.0 15 39-53 19-33 (419)
31 3hvz_A Uncharacterized protein 70.8 3.2 0.00014 19.8 3.4 29 50-79 43-71 (78)
32 2kmm_A Guanosine-3',5'-BIS(dip 65.0 4.5 0.00019 18.9 3.2 28 50-78 38-65 (73)
33 1wgk_A Riken cDNA 2900073H19 p 55.4 7.7 0.00032 17.5 3.0 62 13-76 33-104 (114)
34 1vjk_A Molybdopterin convertin 48.4 8.3 0.00035 17.4 2.2 26 50-76 69-94 (98)
35 2hj1_A Hypothetical protein; s 48.4 3.3 0.00014 19.7 0.2 33 47-80 57-89 (97)
36 2q5w_D Molybdopterin convertin 46.7 13 0.00056 16.1 4.0 26 50-76 48-73 (77)
37 3fd5_A Selenide, water dikinas 41.6 16 0.00067 15.6 3.8 17 149-165 319-335 (394)
38 1rws_A Hypothetical protein PF 36.9 8.9 0.00037 17.1 0.9 45 20-75 28-72 (77)
39 2k9x_A Tburm1, uncharacterized 36.0 9.9 0.00042 16.9 1.0 27 51-77 70-99 (110)
40 1pqh_A Aspartate 1-decarboxyla 35.3 7.8 0.00033 17.5 0.4 15 93-107 55-69 (143)
41 2g1e_A Hypothetical protein TA 31.9 18 0.00078 15.3 1.9 27 50-76 57-86 (90)
42 1xqu_A HIT family hydrolase; p 27.7 14 0.00057 16.1 0.6 20 87-106 46-65 (147)
43 2c45_A Aspartate 1-decarboxyla 27.5 20 0.00085 15.0 1.5 21 49-73 67-87 (139)
44 2qjl_A URM1, ubiquitin-related 27.3 28 0.0012 14.2 3.1 48 27-76 39-95 (99)
45 3o1c_A Histidine triad nucleot 27.2 14 0.00058 16.0 0.6 16 88-103 27-42 (126)
46 3lb5_A HIT-like protein involv 26.7 14 0.0006 16.0 0.6 19 87-105 39-57 (161)
47 1vc3_B L-aspartate-alpha-decar 25.6 22 0.00093 14.8 1.4 23 48-74 42-64 (96)
48 1uhe_A Aspartate 1-decarboxyla 25.3 20 0.00083 15.1 1.1 41 17-74 22-62 (97)
49 2ff4_A Probable regulatory pro 24.1 32 0.0013 13.9 3.2 12 182-193 248-259 (388)
50 3oug_A Aspartate 1-decarboxyla 23.8 22 0.00094 14.8 1.1 14 94-107 42-55 (114)
51 3dwg_C 9.5 kDa culture filtrat 23.7 32 0.0014 13.8 3.1 27 50-76 60-89 (93)
52 2qxx_A DCTP deaminase, deoxycy 23.1 33 0.0014 13.8 1.8 39 37-75 3-44 (190)
53 3oj7_A Putative histidine tria 22.4 19 0.00081 15.2 0.6 16 88-103 19-34 (117)
54 3n1s_A HIT-like protein HINT; 21.5 23 0.00095 14.8 0.8 16 88-103 15-30 (119)
55 1v8c_A MOAD related protein; r 21.4 36 0.0015 13.6 3.0 27 51-77 55-84 (168)
56 2ab1_A Hypothetical protein; H 20.7 31 0.0013 13.9 1.3 58 47-105 10-70 (122)
57 1xne_A Hypothetical protein PF 20.5 37 0.0016 13.4 1.7 35 40-74 10-44 (113)
No 1
>1v9f_A Ribosomal large subunit pseudouridine synthase D; RNA binding, lyase; 1.70A {Escherichia coli} SCOP: d.265.1.3 PDB: 2ist_A 1qyu_A 1prz_A
Probab=100.00 E-value=0 Score=556.10 Aligned_cols=307 Identities=40% Similarity=0.643 Sum_probs=262.3
Q ss_pred EEEECHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCHHCCHHHHHHHHHH
Q ss_conf 99957113687578999987176889899999998599049989932867580489889997056011110233222221
Q gi|254780610|r 13 ISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNIAQENIPLDI 92 (340)
Q Consensus 13 ~~~V~~~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~~~~~~~~~~~~I 92 (340)
+.+|+++++|+|||+||++.|+ ++||++++++|++|.|+|||+++++++++|..||.|.+..+........+...+++|
T Consensus 7 t~tV~~~~~G~RLD~~L~~~~~-~~sr~~i~k~i~~g~V~vNg~~~~k~~~~l~~gD~I~i~~~~~~~~~~~~~~~~~~i 85 (325)
T 1v9f_A 7 TATVSENQLGQRLDQALAEMFP-DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDI 85 (325)
T ss_dssp ----------------------------------------------------------------------CCCCCCCCCE
T ss_pred EEEECCCCCCCHHHHHHHHHCC-CCCHHHHHHHHHCCCEEECCEECCCCCEECCCCCEEEECCCCCCCCCCCCCCCCCCE
T ss_conf 9998977588679999998668-779999999998699899999937854165699999982676665446755688607
Q ss_pred CCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 01440278996240111045678754210022222210244334444364324444332324057212035788889999
Q gi|254780610|r 93 LYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQF 172 (340)
Q Consensus 93 lyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f 172 (340)
||||++|+|||||+||+|||+++...+|+.+.+..++... ....++++||||||+||||||||||+.+++.|+++|
T Consensus 86 lyed~~~ivvnKP~Gl~~~p~~~~~~~tl~~~~~~~~~~~----~~~~~~~~vHRLDr~TSGlll~Ak~~~~~~~l~~~f 161 (325)
T 1v9f_A 86 VYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPI----ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESL 161 (325)
T ss_dssp EEECSSEEEEEECSSCCSSCBTTBSSSSHHHHHHHHCGGG----GGSGGGGBCCCCCTTCEEEEEEESSHHHHHHHHHHH
T ss_pred EEEECCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH----CCCCCCEEECCCCCCCCCEEEEEECCHHHHHHHHHH
T ss_conf 9960889999899987258999988874999999863431----377652166578988742699740005789998876
Q ss_pred HHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEE
Q ss_conf 97211322133445432024332332110013434443322123444555553000012221011256677500123443
Q gi|254780610|r 173 VDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHL 252 (340)
Q Consensus 173 ~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~ 252 (340)
. ++.|.|+|+|+|.|.++. .+.+..++..+......+.+ .+.|++|.|+|++++.. ..+|||+|+|
T Consensus 162 ~----~~~v~K~Y~A~v~G~~~~-~~~~~~~~~~~~~~~~~~~v----~~~gk~a~T~~~~~~~~-----~~~slv~~~~ 227 (325)
T 1v9f_A 162 Q----RREITREYEAVAIGHMTA-GGTVDEPISRHPTKRTHMAV----HPMGKPAVTHYRIMEHF-----RVHTRLRLRL 227 (325)
T ss_dssp H----TTCSEEEEEEEEESCCCC-CEEEECCEEECSSCTTCEEE----CTTSBCCEEEEEEEEEC-----SSEEEEEEEE
T ss_pred H----HCEEEEEEEEEEECCCCC-CCCEECCCCCCCCCCCEEEE----CCCCEEEEEEEEEEEEC-----CCCEEEEEEE
T ss_conf 4----070205899999764276-65050443237777627997----88980358999974423-----8844689997
Q ss_pred CHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCCCCEEEEECCCCHHHHH
Q ss_conf 11589999999987097860415447755444334570135544079804432100042468897689998499789999
Q gi|254780610|r 253 ETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIPEDMLT 332 (340)
Q Consensus 253 ~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t~~~~~f~aplP~~~~~ 332 (340)
+||||||||+||+++||||+||.+||+....... ..........+++||||||++|+|+||.||+.++|+||+|+||++
T Consensus 228 ~TGRtHQIRvHla~lG~PIlGD~~YG~~~~~~~~-~~~~~~~~~~~~~r~~LHA~~L~f~hP~t~~~~~~~aplP~df~~ 306 (325)
T 1v9f_A 228 ETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKG-ASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAPIPQDMVE 306 (325)
T ss_dssp SCCCTTHHHHHHHHTTCCBTTCTTTTCCCCCCTT-CCHHHHHHHHHCCSCSEEEEEEEEECTTTCCEEEEECCCCHHHHH
T ss_pred CCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCCC-CHHHHHHHHHCCCCHHHHCCCCEEECCCCCCEEEEEECCHHHHHH
T ss_conf 8888679999999859937586134876556543-205667665058641253480696669999889999179799999
Q ss_pred HHHHHHC
Q ss_conf 9998851
Q gi|254780610|r 333 VIRKLNE 339 (340)
Q Consensus 333 ~l~~L~~ 339 (340)
+|+.|+.
T Consensus 307 ~l~~L~~ 313 (325)
T 1v9f_A 307 LIEVMRA 313 (325)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999741
No 2
>1v9k_A Ribosomal large subunit pseudouridine synthase C; pseudouridine syntase, RNA binding, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 PDB: 1xpi_A
Probab=100.00 E-value=0 Score=430.44 Aligned_cols=224 Identities=33% Similarity=0.484 Sum_probs=185.5
Q ss_pred HHCCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf 21014402789962401110456787542100222222102443344443643244443323240572120357888899
Q gi|254780610|r 91 DILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSE 170 (340)
Q Consensus 91 ~IlyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~ 170 (340)
-||||||+|+|||||+||+|||+++...++ ++.+..... ....+++|||||++||||||||||+.+++.|++
T Consensus 3 ~IlyED~~ilvvnKP~gl~vh~~~~~~~~~-~~~l~~~~~-------~~~~~~~vHRLDr~TSGlll~Ak~~~a~~~l~~ 74 (228)
T 1v9k_A 3 VIMYEDDHILVLNKPSGTAVHGGSGLSFGV-IEGLRALRP-------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHE 74 (228)
T ss_dssp CEEEECSSEEEEEECTTSCSSCCSSSBCCH-HHHHHHHST-------TCSCCEESSCCCTTCEEEEEEESSHHHHHHHHH
T ss_pred EEEEECCCEEEEECCCCCCCCCCCCCCCHH-HHHHHHHCC-------CCCCCCEEEECCCCCCCEEEEECCHHHHHHHHH
T ss_conf 999978999999989998648998996269-999998677-------887566673079876233898656888999999
Q ss_pred HHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEE
Q ss_conf 99972113221334454320243323321100134344433221234445555530000122210112566775001234
Q gi|254780610|r 171 QFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKC 250 (340)
Q Consensus 171 ~f~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~ 250 (340)
+|. ++.|.|+|+|+|.|.+....++++.|+..+......+.+ .....|++|.|+|++++.+ ..+|||+|
T Consensus 75 ~f~----~r~v~K~Y~a~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gk~a~T~~~~~~~~-----~~~slv~~ 143 (228)
T 1v9k_A 75 QLR----EKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIV--RVSQEGKPSETRFKVEERY-----AFATLVRC 143 (228)
T ss_dssp HHH----TTCSEEEEEEEEESCCCTTCCEECCCEEEEECTTSCEEE--EECTTSBCCCEEEEEEEEC-----SSEEEEEE
T ss_pred HHH----HCCEEEEEECCCCCCCCCCCCEEECCEECCCCCCCEEEE--EECCCCCCCCEEEEEEEEC-----CCCEEEEE
T ss_conf 997----383336870022786322356042020113333403788--8579982232676542034-----88679999
Q ss_pred EECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCCCCEEEEECCCCHHH
Q ss_conf 43115899999999870978604154477554443345701355440798044321000424688976899984997899
Q gi|254780610|r 251 HLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIPEDM 330 (340)
Q Consensus 251 ~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t~~~~~f~aplP~~~ 330 (340)
+|+||||||||+||+++|||||||.+||+.... ........+++|++|||++|+|.||.||+.++|+||+|++|
T Consensus 144 ~~~TGRtHQIRvHla~lG~PIvGD~~Yg~~~~~------~~~~~~~~~~~rl~LHa~~L~f~hP~tg~~~~~~aplP~~f 217 (228)
T 1v9k_A 144 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFD------RQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGL 217 (228)
T ss_dssp EESSCCTTHHHHHHHHTTCCBTTCTTTSCHHHH------HHHHHTTCCCCSCCEEEEEEEEECTTTCCEEEEECCCCHHH
T ss_pred EECCCCHHHHHHHHHHCCCEEECCCCCCCCCCC------HHHHHHCCCCCCHHHHCCCCEEECCCCCCEEEEEECCHHHH
T ss_conf 958683899999987479748367665860018------55676325985278862616978899998899980685999
Q ss_pred HHHHHHHHC
Q ss_conf 999998851
Q gi|254780610|r 331 LTVIRKLNE 339 (340)
Q Consensus 331 ~~~l~~L~~ 339 (340)
+++|++|+-
T Consensus 218 ~~~l~~Lr~ 226 (228)
T 1v9k_A 218 KRCLQKMRN 226 (228)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999973
No 3
>2i82_A Ribosomal large subunit pseudouridine synthase A; lyase/RNA complex; HET: FOU; 2.05A {Escherichia coli}
Probab=100.00 E-value=0 Score=382.58 Aligned_cols=206 Identities=33% Similarity=0.470 Sum_probs=162.7
Q ss_pred HHHHCCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHH
Q ss_conf 22210144027899624011104567875421002222221024433444436432444433232405721203578888
Q gi|254780610|r 89 PLDILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKL 168 (340)
Q Consensus 89 ~~~IlyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l 168 (340)
+++|||||++|+|||||+||+|||++.....+....... . ....+++|||||++||||+|+|||+++++.|
T Consensus 11 ~l~Ilyed~~~lvvnKP~gl~~~~~~~~~~~~~~~~~~~---~------~~~~~~~vhRLD~~TSGlvl~Ak~~~~~~~l 81 (217)
T 2i82_A 11 WLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQ---R------DYPQAESVHRLDMATSGVIVVALTKAAEREL 81 (217)
T ss_dssp SCCEEEECSSEEEEEECTTSBSSCCSSGGGCCBHHHHHH---H------HCTTCEESSCCCTTCEEEEEEESSHHHHHHH
T ss_pred CCEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHH---H------CCCCCCCCCCCCCCCEEEEEEEECHHHHHHH
T ss_conf 952999789999999999982569988776048999875---0------3786431545787521479995020557899
Q ss_pred HHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEE
Q ss_conf 99999721132213344543202433233211001343444332212344455555300001222101125667750012
Q gi|254780610|r 169 SEQFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLL 248 (340)
Q Consensus 169 ~~~f~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv 248 (340)
+++|. ++.+.|+|+|+|.|.+.++.+.+..++..+...+..... .....++.+.+.+... .....+||+
T Consensus 82 ~~~~~----~~~v~K~Y~a~v~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~sl~ 150 (217)
T 2i82_A 82 KRQFR----EREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKV--CYETGKPAQTEYEVVE-----YAADNTARV 150 (217)
T ss_dssp HHHHH----TTCSEEEEEEEEESCCSSSEEEEECCEEECGGGTTCEEE--CTTTCBCCEEEEEEEE-----EETTTEEEE
T ss_pred HHHHH----CCEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCCEEE--EECCCCCCCEEEEEEE-----EECCCCEEE
T ss_conf 99986----593515997875143356643697545201456741356--5037863315899987-----511331477
Q ss_pred EEEECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCCCCEEEEECCCC
Q ss_conf 3443115899999999870978604154477554443345701355440798044321000424688976899984997
Q gi|254780610|r 249 KCHLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIP 327 (340)
Q Consensus 249 ~~~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t~~~~~f~aplP 327 (340)
+|+|+||||||||+|||++|||||||.+||+... ....+||+|||++|+|+||.||+.++|+||+|
T Consensus 151 ~~~~~TGR~HQIRvHla~ig~PIvGD~~Yg~~~~-------------~~~~~r~~LHa~~l~f~~P~t~~~~~~~aP~~ 216 (217)
T 2i82_A 151 VLKPITGRSHQLRVHMLALGHPILGDRFYASPEA-------------RAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD 216 (217)
T ss_dssp EEEESSCCTTHHHHHHHHTTCCBTTCTTTSCHHH-------------HHTCSSCCEEEEEEEEECTTTCCEEEEECCCC
T ss_pred EEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHH-------------CCCCCCHHHHCCCCEEECCCCCCEEEEECCCC
T ss_conf 9998989847999999976982617767688546-------------36996744752678879989998899985899
No 4
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=100.00 E-value=0 Score=293.74 Aligned_cols=206 Identities=20% Similarity=0.292 Sum_probs=156.2
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCHHCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 87578999987176889899999998599049989932867580489889997056011110233222221014402789
Q gi|254780610|r 22 EGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDIIV 101 (340)
Q Consensus 22 g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~~~~~~~~~~~~IlyED~~llv 101 (340)
.+|||+||+..+ .+||++++++|++|+|+|||++++.+++.|..||.|.+... .-++|||++++|
T Consensus 2 ~mRLdkfLs~~~--~~SR~~a~~lI~~G~V~VNG~~v~~~~~~v~~~d~V~~~~~-------------~i~~~e~~~~~v 66 (243)
T 1vio_A 2 SLRLDKFIAENV--GLTRSQATKAIRQSAVKINGEIVKSGSVQISQEDEIYFEDE-------------LLTWIEEGQYFM 66 (243)
T ss_dssp CEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTSCEEETTE-------------ECCSSCCCCEEE
T ss_pred CHHHHHHHHHCC--CCCHHHHHHHHHCCEEEECCEEECCCCEECCCCCEEEECCC-------------EEEEECCCEEEE
T ss_conf 568999999877--85899999999789099999990549968488787995486-------------577603514999
Q ss_pred EECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 96240111045678754210022222210244334444364324444332324057212035788889999972113221
Q gi|254780610|r 102 INKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTRL 181 (340)
Q Consensus 102 inKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~~~~v 181 (340)
+|||+|++||+++.. ..|+.+.+.... ..++++|||||++||||||||++..++..+..+ ...+
T Consensus 67 vnKP~G~~~~~~~~~-~~~v~~~~~~~~---------~~~~~~VhRLDr~TSGlll~ak~~~~~~~~~~~------~~~~ 130 (243)
T 1vio_A 67 LNKPQGCVCSNDDGD-YPTIYQFFDYPL---------AGKLHSAGRLDVDTTGLVLLTDDGQWSHRITSP------KHHC 130 (243)
T ss_dssp EEECTTCBSSCCC---CCBGGGGSCTTG---------GGGCEESSCCCTTCEEEEEEESCHHHHHHHHCT------TSCC
T ss_pred EECCCCCCCCCCCCC-CEEEEEECCCCC---------CCCEEEEEECCCCCCCCEEEECCHHHHHHHHHH------CCCC
T ss_conf 977998511123322-204876124455---------785635444588878706550284663322112------0387
Q ss_pred EEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEECHHHHHHHH
Q ss_conf 33445432024332332110013434443322123444555553000012221011256677500123443115899999
Q gi|254780610|r 182 KRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQIR 261 (340)
Q Consensus 182 ~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~TGRtHQIR 261 (340)
.|+|.+.|.|.+..+. ++ ..++.+ ...|+.+.|.+..++.... +.++|.|+||||||||
T Consensus 131 ~~~y~v~v~~~~~~~~--~~---------~l~~~v----~~~g~~~~~~~~~~~~~~~------~~l~v~l~TGRtHQIR 189 (243)
T 1vio_A 131 EKTYLVTLADPVEENY--SA---------ACAEGI----LLRGEKEPTKPAKLEILDD------YNVNLTISEGRYHQVK 189 (243)
T ss_dssp CEEEEEEESSCCCTTH--HH---------HHHHCC----CCTTCSSCCCCCEEEECSS------SEEEEEESCCCTTHHH
T ss_pred EEEEEEEECCCCCHHH--HH---------HHHCCE----EECCCCCEEEEEEEECCCC------CEEEEECCCCCCHHHH
T ss_conf 2899999953551668--99---------985545----6079022068887631688------3699985789645999
Q ss_pred HHHHHHCCEEECCCC--CCC
Q ss_conf 999870978604154--477
Q gi|254780610|r 262 VHMAHKGNPLIGDPL--YGK 279 (340)
Q Consensus 262 vhla~lG~PIvGD~~--YG~ 279 (340)
+||+++||||+|+.. ||+
T Consensus 190 ~hl~~lG~PIi~l~Ri~~g~ 209 (243)
T 1vio_A 190 RMFAALGNKVVGLHRWKIGD 209 (243)
T ss_dssp HHHHHTTCCEEEEEEEEETT
T ss_pred HHHHHCCCEEEEEEEEEECC
T ss_conf 99998699697989999897
No 5
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=100.00 E-value=4.2e-45 Score=287.25 Aligned_cols=207 Identities=18% Similarity=0.274 Sum_probs=158.0
Q ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCHHCCHHHHHHHHHHCCCCCEEE
Q ss_conf 68757899998717688989999999859904998993286758048988999705601111023322222101440278
Q gi|254780610|r 21 AEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDII 100 (340)
Q Consensus 21 ~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~~~~~~~~~~~~IlyED~~ll 100 (340)
..+|||+||++.+ .+||++++++|++|+|+|||+++++++++|.+||.|.+... . -..+|+..++
T Consensus 2 ~~iRLdk~Ls~~~--~~SR~~a~~lI~~G~V~VNg~~v~~~~~~V~~~d~I~v~~~-----~--------i~~~~~~~~i 66 (234)
T 1ksk_A 2 SHMRLDKFIAQQL--GVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN-----P--------LAQQHGPRYF 66 (234)
T ss_dssp CCEEHHHHHHHHH--TCCHHHHHHHHHTTCEEETTEECCCTTCEECTTCCEEETTE-----E--------ECCCCCCCEE
T ss_pred CCCHHHHHHHHCC--CCCHHHHHHHHHCCEEEECCEECCCCCCCCCCCCEEEECCC-----E--------EEECCCCEEE
T ss_conf 7522999998778--96899999999889599999995678858177666885031-----4--------5204574799
Q ss_pred EEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99624011104567875421002222221024433444436432444433232405721203578888999997211322
Q gi|254780610|r 101 VINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTR 180 (340)
Q Consensus 101 vinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~~~~ 180 (340)
++|||+|+.||++... ..++.+.+.. ....++++|||||++||||||+|++..++..+..+ .+.
T Consensus 67 vlnKP~G~~~~~~~~~-~~~~~~~l~~---------~~~~~~~~V~RLD~dTsGLll~t~d~~~~~~l~~~------~~~ 130 (234)
T 1ksk_A 67 MLNKPQGYVCSTDDPD-HPTVLYFLDE---------PVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSP------RHH 130 (234)
T ss_dssp EEEECTTCBSSSSCSS-SCBGGGGCCC---------TTGGGCEESSCCCTTCEEEEEEESCHHHHHHHHCT------TSC
T ss_pred EEECCCCCCCCCCCCC-CCEEEECCCC---------CCCCEEEECCCCCCCCCCEEEECCCHHHHHHHHHH------HCC
T ss_conf 9989998676664554-3144301345---------44550765022588886548750586788877555------228
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEECHHHHHHH
Q ss_conf 13344543202433233211001343444332212344455555300001222101125667750012344311589999
Q gi|254780610|r 181 LKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQI 260 (340)
Q Consensus 181 v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~TGRtHQI 260 (340)
+.|+|+|.|.|.+.++.. ...++.+ ...++.+.|.+..++... .++++|.+.|||+|||
T Consensus 131 i~k~Y~~~v~g~~~~~~~-----------~~l~~~v----~~~~~~~~~~~~~~~~~~------~~~l~i~l~tGR~hQI 189 (234)
T 1ksk_A 131 CEKTYLVTLESPVADDTA-----------EQFAKGV----QLHNEKDLTKPAVLEVIT------PTQVRLTISEGRYHQV 189 (234)
T ss_dssp CCEEEEEEESSCCCTTHH-----------HHHHHCC----CCTTCSSCCCCCEEEEEE------TTEEEEEESCCCTTHH
T ss_pred CCEEEEECCCCCCCHHHH-----------HHHHEEE----EECCCEEEEEEEEEECCC------CCEEEEEEECCCHHHH
T ss_conf 857996055788877675-----------4542156----757955456567852159------9589999824973899
Q ss_pred HHHHHHHCCEEECCCC--CCC
Q ss_conf 9999870978604154--477
Q gi|254780610|r 261 RVHMAHKGNPLIGDPL--YGK 279 (340)
Q Consensus 261 Rvhla~lG~PIvGD~~--YG~ 279 (340)
|+||+++||||++... ||.
T Consensus 190 R~h~~~~G~pV~~L~Ri~~G~ 210 (234)
T 1ksk_A 190 KRMFAAVGNHVVELHRERIGG 210 (234)
T ss_dssp HHHHHHTTCCEEEEEEEEETT
T ss_pred HHHHHHCCCEEEEEEEEEECC
T ss_conf 999998699798999999876
No 6
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=100.00 E-value=9e-36 Score=231.65 Aligned_cols=161 Identities=24% Similarity=0.264 Sum_probs=107.8
Q ss_pred CCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHH
Q ss_conf 44027899624011104567875421002222221024433444436432444433232405721203578888999997
Q gi|254780610|r 95 EDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVD 174 (340)
Q Consensus 95 ED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~ 174 (340)
++..++|+|||+|++||++......|+.+.+. ..+.++|||||++||||||||++..++..|..
T Consensus 9 ~~~~~iivnKP~G~~~~~~~~~~~~~l~~~l~------------~~~~~~vhRLDr~TSGLll~a~~~~~~~~l~~---- 72 (189)
T 2oml_A 9 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP------------VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ---- 72 (189)
T ss_dssp CCCCEEEEEECTTBCSCSSCCTTCBCGGGTCC------------CSSCEESSCCCTTCEEEEEEESCHHHHHHHHS----
T ss_pred CCCEEEEEECCCCCEECCCCCCCCCCHHHHCC------------CCCCEECCCCCCCCCCCEEEECCCHHHHHHCC----
T ss_conf 99889999999983831779999976889667------------24753763458777880898337303555425----
Q ss_pred HCCCCCEEEEEEEEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEE
Q ss_conf 211322133445432024332332110--013434443322123444555553000012221011256677500123443
Q gi|254780610|r 175 HGKSTRLKRAYYAMVWGIPLPDSGIIN--APLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHL 252 (340)
Q Consensus 175 ~~~~~~v~K~Y~Aiv~G~~~~~~g~i~--~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~ 252 (340)
+.+.+.|+|+|+|.|.+.++....- .....+... ........+......+.+.+.. ......+|+++|.|
T Consensus 73 --~~~~i~K~Y~a~v~g~~~~~~~~~l~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~l~v~l 144 (189)
T 2oml_A 73 --PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPT-LPAGAELVDEPAWLWPRNPPIR-----ERKSIPTSWLKITL 144 (189)
T ss_dssp --TTSCCCEEEEEEEESCCCHHHHHHHHHCCEETTEEC-CCCEEEEECCCTTCCCCSSCCC------CTTSCEEEEEEEE
T ss_pred --CCCCEEEEEEEEEECCCCHHHHHHHHCCCCCCCCCC-CCEEEEEECCCCCCCEEEEEEE-----EEECCCCEEEEEEE
T ss_conf --765367899999953799899999864983468622-3206899535665220466899-----86236514899995
Q ss_pred CHHHHHHHHHHHHHHCCEEECCCCCCC
Q ss_conf 115899999999870978604154477
Q gi|254780610|r 253 ETGRTHQIRVHMAHKGNPLIGDPLYGK 279 (340)
Q Consensus 253 ~TGRtHQIRvhla~lG~PIvGD~~YG~ 279 (340)
.||||||||+||+++||||+++..|..
T Consensus 145 ~tGR~HQIR~hl~~iG~pI~~l~R~~~ 171 (189)
T 2oml_A 145 YEGRNRQVRRMTAHVGFPTLRLIRYAM 171 (189)
T ss_dssp SCCCTTHHHHHHHHTTCCEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf 158749999999986997978899999
No 7
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=100.00 E-value=2.9e-35 Score=228.61 Aligned_cols=162 Identities=24% Similarity=0.282 Sum_probs=108.7
Q ss_pred CCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 01440278996240111045678754210022222210244334444364324444332324057212035788889999
Q gi|254780610|r 93 LYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQF 172 (340)
Q Consensus 93 lyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f 172 (340)
..|+..++++|||+|++||++......|+.+.+. ..+.++|||||++||||||||++..++..+..
T Consensus 35 ~~~~~~~iv~NKP~G~l~~~~d~~~~~tl~~~l~------------~~~l~~VhRLDrdTSGLll~akd~~~~~~l~~-- 100 (217)
T 2olw_A 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP------------VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ-- 100 (217)
T ss_dssp --CCCCEEEEEECTTBCSCSSCCTTSBCGGGTCC------------CCSCEESSCCCTTCEEEEEEESCHHHHHHHHC--
T ss_pred CCCCCEEEEEECCCCEEECCCCCCCCCCHHHHCC------------CCCCEECCCCCCCCCCEEEEECCHHHHHHHCC--
T ss_conf 8899989999899984874779988976899668------------45834875578677881898277678765326--
Q ss_pred HHHCCCCCEEEEEEEEEECCCCCCCCCC-CCCC-CCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEE
Q ss_conf 9721132213344543202433233211-0013-4344433221234445555530000122210112566775001234
Q gi|254780610|r 173 VDHGKSTRLKRAYYAMVWGIPLPDSGII-NAPL-GRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKC 250 (340)
Q Consensus 173 ~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i-~~~l-~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~ 250 (340)
..+.+.|.|+|+|.|.+.++.+.. ...+ ..+... ........+......+.+.+ +. ......+|++++
T Consensus 101 ----~~~~i~K~Y~a~v~g~~~~~~~~~l~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~s~l~i 170 (217)
T 2olw_A 101 ----PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPT-LPAGAELVDEPAWLWPRNPP--IR---ERKSIPTSWLKI 170 (217)
T ss_dssp ----TTCCCCEEEEEEEESCCCHHHHHHHHHCCEETTEEC-CCCEEEEECCCTTCCCCSSC--CC----CCSSCEEEEEE
T ss_pred ----CCCEEEEEEEEEEECCCCHHHHHHHHCCCCCCCCCC-CCCEEEEECCCCCCCCEEEE--EE---EECCCCEEEEEE
T ss_conf ----876156899999934799999999876982378603-33169995266442301136--88---621576068999
Q ss_pred EECHHHHHHHHHHHHHHCCEEECCCCCC
Q ss_conf 4311589999999987097860415447
Q gi|254780610|r 251 HLETGRTHQIRVHMAHKGNPLIGDPLYG 278 (340)
Q Consensus 251 ~~~TGRtHQIRvhla~lG~PIvGD~~YG 278 (340)
.|.||||||||+||+++||||++...+.
T Consensus 171 ~l~tGRtHQIR~hl~~lG~pI~~L~Ri~ 198 (217)
T 2olw_A 171 TLYEGRNRQVRRMTAHVGFPTLRLIRYA 198 (217)
T ss_dssp EESCCCTTHHHHHHHHTTCCEEEEEEEE
T ss_pred EEECCCHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 9624854999999998699798989999
No 8
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=100.00 E-value=1.4e-32 Score=212.71 Aligned_cols=201 Identities=22% Similarity=0.259 Sum_probs=139.7
Q ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCHHCCHHHHHHHHHHCCCCCEEE
Q ss_conf 68757899998717688989999999859904998993286758048988999705601111023322222101440278
Q gi|254780610|r 21 AEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDII 100 (340)
Q Consensus 21 ~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~~~~~~~~~~~~IlyED~~ll 100 (340)
...|||+||+.. ..+||+.+++||++|.|+|||++++ .+++|.+||.|.+....... .-+++..++
T Consensus 5 ~~iRL~K~La~~--g~~SRr~ae~lI~~GrV~VNGkvv~-~~~kV~~~D~I~vdg~~~~~-----------~~~~~~~~i 70 (290)
T 3dh3_A 5 SSVRLNKYISES--GICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDVVKVNGQLIEP-----------REAEDLVLI 70 (290)
T ss_dssp CCEEHHHHHHTT--TSSCHHHHHHHHHTTCEEETTEECC-TTCEECTTCCEEETTEEECC-----------CCGGGCCEE
T ss_pred CCCCHHHHHHHC--CCCHHHHHHHHHHCCEEEECCEECC-CCCCCCCCCEEEECCEECCC-----------CCCCCEEEE
T ss_conf 872599999877--8842999999997796998999957-98897999989999998444-----------356525999
Q ss_pred EEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99624011104567875421002222221024433444436432444433232405721203578888999997211322
Q gi|254780610|r 101 VINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKSTR 180 (340)
Q Consensus 101 vinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~~~~ 180 (340)
+.|||.|+.|+...+. ..++.. +. ....++++|||||++|||||||+++...+..|. .....
T Consensus 71 ~~~kp~~~~~~~~~~~-~~~~~~-l~----------~~~~rl~~VGRLD~dTsGLLLlTnDg~l~~~L~------~p~~~ 132 (290)
T 3dh3_A 71 ALNKPVGIVSTTEDGE-RDNIVD-FV----------NHSKRVFPIGRLDKDSQGLIFLTNHGDLVNKIL------RAGND 132 (290)
T ss_dssp EEEECTTCBCCCCSSC-TTBHHH-HH----------TCSSCCEESSCCCTTCEEEEEEESCTTHHHHHH------CGGGC
T ss_pred EECCCCCEECCCCCCC-CCCHHH-HC----------CCCCCEEECCCCCCCCCCEEEEECCCHHHHHHH------CCCCC
T ss_conf 7079874233545677-775444-11----------355523561346888875499955958999986------02226
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEECHHHHHHH
Q ss_conf 13344543202433233211001343444332212344455555300001222101125667750012344311589999
Q gi|254780610|r 181 LKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTHQI 260 (340)
Q Consensus 181 v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~TGRtHQI 260 (340)
+.|+|++.|.|.+.++. +. ..+..+... ++. +...... ....+++++.+.|||+|||
T Consensus 133 i~k~Y~v~v~g~i~~~~--l~---------~l~~Gv~~~---~~~-----~~~~~~~----~~~~~~l~i~l~eGr~rqI 189 (290)
T 3dh3_A 133 HEKEYLVTVDKPITEEF--IR---------GMSAGVPIL---GTV-----TKKCKVK----KEAPFVFRITLVQGLNRQI 189 (290)
T ss_dssp CCEEEEEEESSCCCHHH--HH---------HHHTCCBCS---SSB-----CCCCEEE----ECSSSEEEEEESCCCTTHH
T ss_pred CCCEEEEEECCCCCHHH--HH---------HHHCCCEEE---EEE-----EEEEEEE----ECCCCEEEEEECCCCHHHH
T ss_conf 76268999936799999--99---------997387531---157-----3212455----2367158999258867999
Q ss_pred HHHHHHHCCEEECCCC
Q ss_conf 9999870978604154
Q gi|254780610|r 261 RVHMAHKGNPLIGDPL 276 (340)
Q Consensus 261 Rvhla~lG~PIvGD~~ 276 (340)
|+||+++||||+.=..
T Consensus 190 Rr~~~~iG~~V~~L~R 205 (290)
T 3dh3_A 190 RRMCEHFGYEVKKLER 205 (290)
T ss_dssp HHHHHHTTCCEEEEEE
T ss_pred HHHHHHCCCEEEEEEE
T ss_conf 9999986997979899
No 9
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=99.84 E-value=1.6e-21 Score=146.67 Aligned_cols=136 Identities=21% Similarity=0.258 Sum_probs=91.0
Q ss_pred EEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCC
Q ss_conf 78996240111045678754210022222210244334444364324444332324057212035788889999972113
Q gi|254780610|r 99 IIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHGKS 178 (340)
Q Consensus 99 llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~~~ 178 (340)
++++|||+|++|+..... ..|+.+.+. ...+.+.|||||++|||||||+.+...+..|.. ..
T Consensus 16 yillNKP~G~v~t~~d~~-r~tv~dll~-----------~~~rl~~VGRLD~dtsGLLLlTnDg~l~~~L~~------p~ 77 (237)
T 2gml_A 16 LIALNKPVGIVSTTEDGE-RDNIVDFVN-----------HSKRVFPIGRLDKDSQGLIFLTNHGDLVNKILR------AG 77 (237)
T ss_dssp EEEEEECTTCBCCSSSSC-SSBHHHHSC-----------CSSCCEEESCCCTTCEEEEEEESCHHHHHHHHH------HH
T ss_pred EEEEECCCCEEECCCCCC-CCCCHHHCC-----------CCCCEEECCCCCCCCCCCEEEECCHHHHHHHHC------CC
T ss_conf 999989997696558999-997165336-----------645531404678888774899468779898628------98
Q ss_pred CCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEEEECHHHHH
Q ss_conf 22133445432024332332110013434443322123444555553000012221011256677500123443115899
Q gi|254780610|r 179 TRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKCHLETGRTH 258 (340)
Q Consensus 179 ~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~~~~TGRtH 258 (340)
..|.|+|++.|.|.+.++. ++. | +..+...+ +. +....... ...+.+.+.+.+||.|
T Consensus 78 ~~i~K~Y~v~v~g~i~~~~--l~~-l--------~~Gv~l~~---~~-----~~~~~~~~----~~~~~~~i~l~eGrnr 134 (237)
T 2gml_A 78 NDHEKEYLVTVDKPITEEF--IRG-M--------SAGVPILG---TV-----TKKCKVKK----EAPFVFRITLVQGLNR 134 (237)
T ss_dssp HHSCEEEEEEESSCCCHHH--HHH-H--------SSCCEETT---EE-----CCCCEEEE----EETTEEEEEECCCSTT
T ss_pred CCCEEEEEEEECCCCCHHH--HHH-H--------HCCCEECC---EE-----EECCCCCC----CCCEEEEEEECCCCHH
T ss_conf 7651699888536899999--999-9--------82985312---25-----00100135----6764999996678779
Q ss_pred HHHHHHHHHCCEEECCC
Q ss_conf 99999987097860415
Q gi|254780610|r 259 QIRVHMAHKGNPLIGDP 275 (340)
Q Consensus 259 QIRvhla~lG~PIvGD~ 275 (340)
|||.||+++||||+-=.
T Consensus 135 qIRrm~~~lG~~V~~L~ 151 (237)
T 2gml_A 135 QIRRMCEHFGYEVKKLE 151 (237)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHCCCEEEEEE
T ss_conf 99999998799785889
No 10
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=99.57 E-value=1.5e-16 Score=117.17 Aligned_cols=87 Identities=20% Similarity=0.221 Sum_probs=74.3
Q ss_pred CCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCH-HCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 757899998717688989999999859904998993286758048988999705601-1110233222221014402789
Q gi|254780610|r 23 GRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQ-KLNIAQENIPLDILYEDDDIIV 101 (340)
Q Consensus 23 ~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~-~~~~~~~~~~~~IlyED~~llv 101 (340)
+|||+||...++ ..||+.++++|++|.|+|||+++ +++++|..||.|.+..+... ...+.+.+.++.|+|||++++|
T Consensus 1 mRlDk~L~~~~~-~~SRs~~~~lI~~G~V~vng~~~-k~s~~V~~Gd~i~i~~~~~~~~~~v~~i~~~~~i~~ED~~l~i 78 (92)
T 2k6p_A 1 MRIDKFLQSVGL-VKRRVLATDMCNVGAVWLNGSCA-KASKEVKAGDTISLHYLKGIEEYTILQIPALKNVPRKDTHLYI 78 (92)
T ss_dssp CBHHHHSTTTTS-CCCCCSSCCHHHHTCCEETTEEC-CTTCBCCTTCEEEECCSSCCEEEEECCCCCCSCCCSSSTTSSE
T ss_pred CCHHHHHHHCCC-CCCHHHHHHHHHCCCEEECCEEE-EECCEECCCCEEEEEECCCCEEEEEEECCCCCCCCHHHHCCCE
T ss_conf 977899987377-37999999999889289799997-5236827999999983897079999978865798525518269
Q ss_pred EECCCHHHCC
Q ss_conf 9624011104
Q gi|254780610|r 102 INKPAGLVVH 111 (340)
Q Consensus 102 inKPaGl~vh 111 (340)
+|||+||--|
T Consensus 79 i~K~~~le~~ 88 (92)
T 2k6p_A 79 APKTKELEHH 88 (92)
T ss_dssp EECCCC----
T ss_pred ECCHHCCCCC
T ss_conf 8060046344
No 11
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=98.51 E-value=2.9e-07 Score=61.80 Aligned_cols=56 Identities=23% Similarity=0.358 Sum_probs=46.8
Q ss_pred HHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEEC
Q ss_conf 1368757899998717688989999999859904998993286758048988999705
Q gi|254780610|r 19 STAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVP 76 (340)
Q Consensus 19 ~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~ 76 (340)
...++|||+||...-. --||+.+.++|++|.|+|||+++ ++++.|..||.|.+...
T Consensus 5 ~~~~mRlD~~L~~~r~-~KtRs~A~~~i~~G~V~vNg~~~-K~s~~v~~gD~i~i~~~ 60 (133)
T 1dm9_A 5 PAVEVRLDKWLWAARF-YKTRALAREMIEGGKVHYNGQRS-KPSKIVELNATLTLRQG 60 (133)
T ss_dssp CTTCCBHHHHHHHTTS-SSSHHHHHHHHHTTCEEETTEEC-CTTCBCCTTCEEEEEET
T ss_pred CCCCEEHHHHHHHHHH-HHHHHHHHHHHHCCCEEECCEEC-CCCCCCCCCCEEEEEEC
T ss_conf 8886863899987162-50499999999869479899646-76666889998999868
No 12
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli K12} SCOP: d.66.1.6
Probab=98.41 E-value=3.8e-08 Score=67.00 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=56.4
Q ss_pred CHHCCCEEEEEECHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEE
Q ss_conf 1101624999957113687578999987176889899999998599049989932867580489889997
Q gi|254780610|r 5 LDNCSSIKISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLIT 74 (340)
Q Consensus 5 ~~~~~~~~~~~V~~~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~ 74 (340)
++..+.|+.+....+. ..|||+||+..=. .-||++++++|++|+|+|||++++++++.+.+||.|.+.
T Consensus 4 ~~~~~~~~~~~l~~~~-~irL~k~L~~~g~-~~Sr~eAk~lI~~G~V~VNG~~v~~p~~~v~~gD~V~vd 71 (79)
T 1p9k_A 4 IHRMSNMATFSLGKHP-HVELCDLLKLEGW-SESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA 71 (79)
T ss_dssp CCSSCCCCEEECCSCS-CCCHHHHHHHHTS-CSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEET
T ss_pred HHCCCCCCEEECCCCC-CEEHHHHHHHCCC-CCCHHHHHHHHHCCCEEECCEEECCCCCCCCCCCEEEEC
T ss_conf 0001477138649997-1979999987788-368999999998499798999927788798999999999
No 13
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=98.11 E-value=5.1e-06 Score=54.36 Aligned_cols=54 Identities=28% Similarity=0.413 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEE
Q ss_conf 6875789999871768898999999985990499899328675804898899970
Q gi|254780610|r 21 AEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITV 75 (340)
Q Consensus 21 ~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~ 75 (340)
-+.|||+.+-+. .-.-|+.+++++|..|.|.|||+++..|++.|++||.|.+.-
T Consensus 97 LE~RlD~vv~r~-g~a~s~~~ARQ~v~Hghv~vng~~v~ips~~~k~gd~i~~~~ 150 (209)
T 2vqe_D 97 LESRLDNVVYRL-GFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAE 150 (209)
T ss_dssp HHTBHHHHHHHT-TSSSSHHHHHHHHHTTCEEETTEECCCTTCBCCTTCEEEECG
T ss_pred HHHHHHHHHHHC-CCCCCHHHHHHHHHHCCEECCCEEECCCCEECCCCCEEEECC
T ss_conf 999889999834-751799999999873073219979735886827999998610
No 14
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=98.09 E-value=4.6e-06 Score=54.64 Aligned_cols=53 Identities=23% Similarity=0.386 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEE
Q ss_conf 687578999987176889899999998599049989932867580489889997
Q gi|254780610|r 21 AEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLIT 74 (340)
Q Consensus 21 ~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~ 74 (340)
-++|||..+-+. .-..|+.++++++..|.|.|||+++..|++.+++||.|.+.
T Consensus 49 LE~RLDnvvyR~-gfa~t~~~ARQlv~Hghi~VNgk~v~ipS~~vk~gD~I~~~ 101 (159)
T 1c05_A 49 LESRLDNLVYRL-GLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVR 101 (159)
T ss_dssp HHHBHHHHHHHT-TSCSSHHHHHHHHHTTCEEETTEECCCSSCBCCTTCEEEEC
T ss_pred HHHHHHHHHHCC-CCCCCHHHHHHHHHHCCEEECCEEEEECCEECCCCCEEEEC
T ss_conf 998656772047-75279999999998037070247985256774899898732
No 15
>3ofo_D 30S ribosomal protein S4; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=97.89 E-value=6.1e-06 Score=53.88 Aligned_cols=54 Identities=26% Similarity=0.315 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEE
Q ss_conf 6875789999871768898999999985990499899328675804898899970
Q gi|254780610|r 21 AEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITV 75 (340)
Q Consensus 21 ~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~ 75 (340)
-++|||..+-+ +.-.-|+.++++++..|.|.|||+++.-|++.+++||.|.+.-
T Consensus 93 LE~RLDnvvyR-~gfa~t~~~ARQlV~Hghi~VNgk~v~ips~~~k~gd~i~v~e 146 (205)
T 3ofo_D 93 LEGRLDNVVYR-MGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIRE 146 (205)
T ss_dssp HHHBHHHHHHT-TTSCSSHHHHHHHHHTTCEESSSSBCCSTTCBCCTTCEEEECS
T ss_pred HHHHHHHHHHH-CCCCCCHHHHHHHHHHCCEEECCEEECCCCCCCCCCCEEEHHH
T ss_conf 99877789860-6620479999988860886509978637872536998975313
No 16
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=97.87 E-value=4.8e-06 Score=54.52 Aligned_cols=53 Identities=23% Similarity=0.287 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEE
Q ss_conf 687578999987176889899999998599049989932867580489889997
Q gi|254780610|r 21 AEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLIT 74 (340)
Q Consensus 21 ~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~ 74 (340)
-+.|||..+-+ +.-.-|+.+++++|..|.|.|||+++.-|++.|++||.|.+.
T Consensus 87 LE~RLDnvvyR-~gfa~t~~~ARQlV~Hghi~VNgk~v~ipSy~vk~GD~I~v~ 139 (201)
T 3bbn_D 87 LEMRLDNILFR-LGMAPTIPGARQLVNHRHILVNGRIVDIPSYRCKPQDTIMAR 139 (201)
T ss_dssp HHSBTTTTTTT-TTSSSSSHHHHHHHHTTCEEETTEECCCTTCBCCTTEEEEEC
T ss_pred HHHHHHHHHHH-CCCCCCHHHHCCEEECCCEEECCEEECCCCEECCCCCEEEEC
T ss_conf 99876788750-552157776130473278487798977998782799989973
No 17
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein structure initiative; HET: MSE; 1.53A {Streptococcus thermophilus lmg 18311}
Probab=97.56 E-value=4.2e-05 Score=48.91 Aligned_cols=52 Identities=21% Similarity=0.267 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHCCCE--EECCEEECCCCCEECCCCEEEEE
Q ss_conf 875789999871768898999999985990--49989932867580489889997
Q gi|254780610|r 22 EGRIDRWLATSLKEQFSRSYVKILILNGFI--SINGMVSKNPNRKVVPGDSFLIT 74 (340)
Q Consensus 22 g~RLD~~L~~~l~~~~sR~~i~kli~~G~V--~vnG~~~~~~~~~l~~gd~I~i~ 74 (340)
.+|||.+|..+- -.-||++++.+|.+|.| +|||+++++|++.+..++.|.+.
T Consensus 6 k~RLD~~Lv~~g-l~~SR~~A~~lI~~G~V~~~Vng~~v~Kps~~v~~~~~i~v~ 59 (291)
T 3hp7_A 6 KERVDVLAYKQG-LFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLK 59 (291)
T ss_dssp EEEHHHHHHHTT-SSSSHHHHHHHHHTTCEEETTTCCBCCCTTCEEETTCCEEET
T ss_pred HHHHHHHHHHCC-CCCCHHHHHHHHHCCCCEEEECCEEECCCCCCCCCCCEEEEE
T ss_conf 767999999784-811499999999859952420998946886787999989994
No 18
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=5.2e-05 Score=48.33 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=48.0
Q ss_pred HHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCC--CEEEEE
Q ss_conf 113687578999987176889899999998599049989932867580489--889997
Q gi|254780610|r 18 DSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPG--DSFLIT 74 (340)
Q Consensus 18 ~~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~g--d~I~i~ 74 (340)
+..++.|||..|.+.- -.-|+.+++++|..|.|+|||++++.|++.|..+ |.|.+.
T Consensus 3 ~~~~~RRLd~il~r~~-fa~S~~~ARqlI~HghI~Vng~~V~~Ps~lV~~~~Ed~It~~ 60 (71)
T 2cqj_A 3 SGSSGRRLPTVLLKLR-MAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWV 60 (71)
T ss_dssp SSCCEEEHHHHHHHTT-CSSSHHHHHHHHHTTCEEETTBCCCCTTCEEEHHHHTTEEES
T ss_pred CCHHHCCHHHHHHHHC-CCCCHHHHHHHHHCCEEEECCEEECCCCEEECCCCCCEEEEE
T ss_conf 3032301378998826-537899999997669599999996579769538988769996
No 19
>1k8w_A TRNA pseudouridine synthase B; protein-RNA complex, T stem-loop, lyase/RNA complex; HET: FHU; 1.85A {Escherichia coli} SCOP: b.122.1.1 d.265.1.2 PDB: 1zl3_A* 1r3f_A
Probab=97.41 E-value=0.0002 Score=44.86 Aligned_cols=70 Identities=19% Similarity=0.398 Sum_probs=49.6
Q ss_pred CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r 97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG 176 (340)
Q Consensus 97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~ 176 (340)
+.+++||||+|+.+| -++..+...+.. .+.|-...||--.||||++|-+..+ .+...|..
T Consensus 25 nG~l~i~Kp~g~tS~--------~~v~~~r~~l~~--------kKvGH~GTLDP~AtGvL~v~~G~aT--Kl~~~~~~-- 84 (327)
T 1k8w_A 25 NGVLLLDKPQGMSSN--------DALQKVKRIYNA--------NRAGHTGALDPLATGMLPICLGEAT--KFSQYLLD-- 84 (327)
T ss_dssp CEEEEEEECTTCCHH--------HHHHHHHHHTTC--------SCEEESSCCCTTCEEEEEEEEGGGG--GGTHHHHT--
T ss_pred CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHCC--
T ss_conf 469999689989989--------999999998589--------8587786579856013999978787--48888778--
Q ss_pred CCCCEEEEEEEEEE
Q ss_conf 13221334454320
Q gi|254780610|r 177 KSTRLKRAYYAMVW 190 (340)
Q Consensus 177 ~~~~v~K~Y~Aiv~ 190 (340)
-.|+|.|.+.
T Consensus 85 ----~~K~Y~~~~~ 94 (327)
T 1k8w_A 85 ----SDKRYRVIAR 94 (327)
T ss_dssp ----SCEEEEEEEE
T ss_pred ----CCCCEEEEEE
T ss_conf ----9873289999
No 20
>3jyv_D 40S ribosomal protein S9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
Probab=97.20 E-value=0.00011 Score=46.46 Aligned_cols=57 Identities=16% Similarity=0.071 Sum_probs=46.4
Q ss_pred HHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEEC
Q ss_conf 1368757899998717688989999999859904998993286758048988999705
Q gi|254780610|r 19 STAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVP 76 (340)
Q Consensus 19 ~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~ 76 (340)
+-.+.|||..+.+.- -.-|..+++++|..|.|+|||++++.|++.|..|++..+.+.
T Consensus 98 ~lLeRRLd~vv~r~g-~a~s~~~ARqlI~HGHI~Vng~~V~iPSy~V~~~~Ed~I~~~ 154 (158)
T 3jyv_D 98 DFLERRLQTQVYKLG-LAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFA 154 (158)
T ss_dssp HHHHHBHHHHHHHHT-SSSSTTTTTHHHHTSCEEESSCCCSCTTCBCCSSSCEEECST
T ss_pred HHHHHHHHHHHHHHC-CCCCHHHHHHHEECCEEEECCEEECCCCEEEECCCCCEEEEC
T ss_conf 998776888999957-779989998766788899999996379738425985669852
No 21
>1r3e_A TRNA pseudouridine synthase B; RNA modification, pseudouridylation, lyase/RNA complex; HET: FHU; 2.10A {Thermotoga maritima} SCOP: b.122.1.1 d.265.1.2 PDB: 1ze2_A* 2ab4_A* 1ze1_A
Probab=97.17 E-value=0.00024 Score=44.42 Aligned_cols=70 Identities=24% Similarity=0.415 Sum_probs=48.1
Q ss_pred CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf 02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r 97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG 176 (340)
Q Consensus 97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~ 176 (340)
+.+++||||.|+.+| -+++.+...+.. .+.|-...||-..||||+++-+..+ .+...+.
T Consensus 3 nG~l~v~KP~g~tS~--------~vv~~vr~~l~~--------kkvGH~GTLDP~AtGvL~i~~g~aT--k~~~~~~--- 61 (309)
T 1r3e_A 3 HGILVAYKPKGPTSH--------DVVDEVRKKLKT--------RKVGHGGTLDPFACGVLIIGVNQGT--RILEFYK--- 61 (309)
T ss_dssp CEEEEEEECSSSCHH--------HHHHHHHHHTTC--------SCEEESSCCCTTCEEEEEEEEGGGG--GGGGGGT---
T ss_pred CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHH---
T ss_conf 669999779989989--------999999998688--------9787685679746137999988776--2447761---
Q ss_pred CCCCEEEEEEEEEE
Q ss_conf 13221334454320
Q gi|254780610|r 177 KSTRLKRAYYAMVW 190 (340)
Q Consensus 177 ~~~~v~K~Y~Aiv~ 190 (340)
.-.|+|.|.+.
T Consensus 62 ---~~~K~Y~~~~~ 72 (309)
T 1r3e_A 62 ---DLKKVYWVKMR 72 (309)
T ss_dssp ---TSCEEEEEEEE
T ss_pred ---HCCCEEEEEEE
T ss_conf ---22755479999
No 22
>1sgv_A TRNA pseudouridine synthase B; hinged motion, tRNA modification, structural genomics, PSI, protein structure initiative; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: b.122.1.1 d.265.1.2
Probab=97.15 E-value=0.00026 Score=44.17 Aligned_cols=71 Identities=28% Similarity=0.415 Sum_probs=48.9
Q ss_pred CCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHH
Q ss_conf 40278996240111045678754210022222210244334444364324444332324057212035788889999972
Q gi|254780610|r 96 DDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDH 175 (340)
Q Consensus 96 D~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~ 175 (340)
+..+++||||.|+.+| .+++.+...+.. .+.|-..+||-..||+|+++-+..+ .+...|.
T Consensus 5 ~~G~l~i~KP~G~TS~--------~~v~~vk~~~~~--------~KvGH~GTLDP~AsGvL~i~vG~aT--Kl~~~~~-- 64 (316)
T 1sgv_A 5 GPGIVVIDKPAGMTSH--------DVVGRCRRIFAT--------RRVGHAGTLDPMATGVLVIGIERAT--KILGLLT-- 64 (316)
T ss_dssp CSEEEEEEECTTCCHH--------HHHHHHHHHTTC--------SCEEESSCCCTTCEEEEEEEEGGGG--GGGGGTT--
T ss_pred CCEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHH--
T ss_conf 9889999779999989--------999999998587--------8456487789756334999978788--4779985--
Q ss_pred CCCCCEEEEEEEEEE
Q ss_conf 113221334454320
Q gi|254780610|r 176 GKSTRLKRAYYAMVW 190 (340)
Q Consensus 176 ~~~~~v~K~Y~Aiv~ 190 (340)
.-.|+|.|.+.
T Consensus 65 ----~~~K~Y~~~~~ 75 (316)
T 1sgv_A 65 ----AAPKSYAATIR 75 (316)
T ss_dssp ----TSCEEEEEEEE
T ss_pred ----CCCEEEEEEEE
T ss_conf ----18648999999
No 23
>1s1h_D 40S ribosomal protein S9-A; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} SCOP: i.1.1.1
Probab=96.90 E-value=0.00088 Score=41.01 Aligned_cols=57 Identities=16% Similarity=0.085 Sum_probs=47.4
Q ss_pred HHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEE
Q ss_conf 1136875789999871768898999999985990499899328675804898899970
Q gi|254780610|r 18 DSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITV 75 (340)
Q Consensus 18 ~~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~ 75 (340)
.+-...|||..+.+.- -.-|..+++++|..|.|+|||++++.|++.|..|++..+..
T Consensus 84 ~~~lerRL~~~v~r~~-~a~s~~~Arq~I~hghi~v~~~~v~~Ps~~v~~~~E~~i~~ 140 (179)
T 1s1h_D 84 EDFLERRLQTQVYKLG-LAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDF 140 (179)
T ss_dssp SSSGGGBHHHHHHHHT-SSSSHHHHHHHHHHTCBEETTEECCCTTCBCCTTEECCBCS
T ss_pred HHHHHHHHHHHHHHHC-CCCCHHHHHHHHHCCCEEECCEEECCCCEEEECCCCCEEEE
T ss_conf 9999888999999936-66889999999754763589989524865841588453764
No 24
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=96.32 E-value=0.0015 Score=39.65 Aligned_cols=86 Identities=19% Similarity=0.148 Sum_probs=54.8
Q ss_pred CCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHH
Q ss_conf 01440278996240111045678754210022222210244334444364324444332324057212035788889999
Q gi|254780610|r 93 LYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQF 172 (340)
Q Consensus 93 lyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f 172 (340)
-|-...+|.+|||+|+.+| -++..+...+.. .+.|-..-||--.||||++|-+..+ .+...|
T Consensus 62 ~~~~~G~l~idKP~G~TS~--------~vv~~vkk~l~~--------kK~GH~GTLDP~AtGvL~i~ig~aT--Kl~~~~ 123 (357)
T 2apo_A 62 DLIKYGVVVVDKPRGPTSH--------EVSTWVKKILNL--------DKAGHGGTLDPKVTGVLPVALERAT--KTIPMW 123 (357)
T ss_dssp HHHHTEEEEEEECSSSCHH--------HHHHHHHHHTTC--------SCEEESSCCCTTCEEEEEEEEGGGG--GGGGGT
T ss_pred HHHCCCEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCCEEEEEEECHHH--CCCHHH
T ss_conf 9855968999789999989--------999999998488--------8257786789767206999988564--306454
Q ss_pred HHHCCCCCEEEEEEEEEECCCCCCCCCCCC
Q ss_conf 972113221334454320243323321100
Q gi|254780610|r 173 VDHGKSTRLKRAYYAMVWGIPLPDSGIINA 202 (340)
Q Consensus 173 ~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~ 202 (340)
. .-.|+|.|.+.=....++..|+.
T Consensus 124 ~------~~~K~Y~~~~~lg~~t~~~di~~ 147 (357)
T 2apo_A 124 H------IPPKEYVCLMHLHRDASEEDILR 147 (357)
T ss_dssp T------SSCEEEEEEEEESSCCCHHHHHH
T ss_pred C------CCCEEEEEEEEEEECCCCHHHHH
T ss_conf 3------79809999999722244177999
No 25
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase/structural protein complex; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3hjw_A* 3hjy_A
Probab=96.32 E-value=0.0022 Score=38.68 Aligned_cols=73 Identities=21% Similarity=0.311 Sum_probs=48.7
Q ss_pred CCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHH
Q ss_conf 14402789962401110456787542100222222102443344443643244443323240572120357888899999
Q gi|254780610|r 94 YEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFV 173 (340)
Q Consensus 94 yED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~ 173 (340)
+-...+|+||||.|+.+| .+++.+...+.. .+.|-..=||=..||||++|-+..+ .+.+.|.
T Consensus 43 ~~~~G~l~i~KP~g~tS~--------~~v~~~k~~~~~--------~KvGH~GTLDP~AsGvL~i~ig~aT--k~~~~~~ 104 (334)
T 2aus_C 43 HIQYGVINLDKPPGPTSH--------EVVAWIKRILNL--------EKAGHGGTLDPKVSGVLPVALERAT--RVVQALL 104 (334)
T ss_dssp HHHTEEEEEEECSSSCHH--------HHHHHHHHHTTC--------SCEEESSCCCTTCEEEEEEEEGGGG--GGGGGGT
T ss_pred HHCCCEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCEEEEEEEECHHH--HHHHHHC
T ss_conf 747708999569989989--------999999987361--------2137999999977378999987898--6869875
Q ss_pred HHCCCCCEEEEEEEEEE
Q ss_conf 72113221334454320
Q gi|254780610|r 174 DHGKSTRLKRAYYAMVW 190 (340)
Q Consensus 174 ~~~~~~~v~K~Y~Aiv~ 190 (340)
.-.|+|.|.+.
T Consensus 105 ------~~~K~Y~~~~~ 115 (334)
T 2aus_C 105 ------PAGKEYVALMH 115 (334)
T ss_dssp ------TCCEEEEEEEE
T ss_pred ------CCCCEEEEEEE
T ss_conf ------69818999998
No 26
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=94.60 E-value=0.14 Score=27.96 Aligned_cols=19 Identities=5% Similarity=-0.010 Sum_probs=9.9
Q ss_pred EEEEECCHHHHHHHHHHHH
Q ss_conf 0572120357888899999
Q gi|254780610|r 155 VMVVAKNDLAHQKLSEQFV 173 (340)
Q Consensus 155 lll~Ak~~~a~~~l~~~f~ 173 (340)
+++.+-+....-.+.+-+.
T Consensus 190 ~~~gG~DQ~~~i~~~rd~~ 208 (432)
T 1h3f_A 190 VEMGGTDQRFNLLVGREVQ 208 (432)
T ss_dssp EEEEEGGGHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 7667373799999888988
No 27
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=94.17 E-value=0.083 Score=29.25 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEECCCHHCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 87578999987176889899999998599049989932867580489889997056011110233222221014402789
Q gi|254780610|r 22 EGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITVPAAQKLNIAQENIPLDILYEDDDIIV 101 (340)
Q Consensus 22 g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~~~~~~~~~~~~IlyED~~llv 101 (340)
+.-|--||...|.-..+.+.+++.+.+|.|.|||++.++..+.+-.-|.|++. . + .++++|.....++
T Consensus 7 siPL~iiLRd~Lk~A~t~rEak~Il~~~~V~VDGkvr~d~k~PvGlmDVisi~--~--------e--~yRv~~d~kgr~~ 74 (213)
T 3kbg_A 7 SVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGFMDVIEIN--G--------E--SYRVVYNDQGALV 74 (213)
T ss_dssp CEEHHHHHHHHHHTTTCGGGHHHHHHTTCEEETTEECCCTTCEECTTCEEEET--T--------E--EEEEEECTTSCEE
T ss_pred CCCEEHHHHHHHCCCCCHHHHHHHHHCCEEEECCEEECCCCCCCCEEEEEEEC--C--------C--EEEEEECCCCEEE
T ss_conf 66540553135341265799999986893898999964489987437899978--9--------8--7999986996199
Q ss_pred EE
Q ss_conf 96
Q gi|254780610|r 102 IN 103 (340)
Q Consensus 102 in 103 (340)
+.
T Consensus 75 ~~ 76 (213)
T 3kbg_A 75 LM 76 (213)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
No 28
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=92.23 E-value=0.12 Score=28.25 Aligned_cols=16 Identities=6% Similarity=0.054 Sum_probs=7.9
Q ss_pred CHHHHHHHHHCCCEEE
Q ss_conf 9899999998599049
Q gi|254780610|r 38 SRSYVKILILNGFISI 53 (340)
Q Consensus 38 sR~~i~kli~~G~V~v 53 (340)
+...+++.+.++.++|
T Consensus 20 ~~~~l~~~~~~~~~~~ 35 (432)
T 2jan_A 20 DLDTLAAEAQRGPMTV 35 (432)
T ss_dssp CHHHHHHHHHHSCCEE
T ss_pred CHHHHHHHHHCCCCEE
T ss_conf 9999999984699679
No 29
>1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=89.42 E-value=0.055 Score=30.30 Aligned_cols=15 Identities=7% Similarity=0.129 Sum_probs=7.4
Q ss_pred HHHHHHHHHCCCEEE
Q ss_conf 899999998599049
Q gi|254780610|r 39 RSYVKILILNGFISI 53 (340)
Q Consensus 39 R~~i~kli~~G~V~v 53 (340)
...+++++.++.+++
T Consensus 21 ~~~l~~~l~~~~~~~ 35 (420)
T 1jil_A 21 EQGIEDLLNKEQVTL 35 (420)
T ss_dssp HHHHHHHHHHSCCEE
T ss_pred HHHHHHHHHCCCCEE
T ss_conf 999999985799579
No 30
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=88.82 E-value=0.065 Score=29.89 Aligned_cols=15 Identities=7% Similarity=0.166 Sum_probs=7.2
Q ss_pred HHHHHHHHHCCCEEE
Q ss_conf 899999998599049
Q gi|254780610|r 39 RSYVKILILNGFISI 53 (340)
Q Consensus 39 R~~i~kli~~G~V~v 53 (340)
...+++++..+.+++
T Consensus 19 ~~~l~~~l~~~~~~~ 33 (419)
T 2ts1_A 19 EDGLRKLLNEERVTL 33 (419)
T ss_dssp HHHHHHHHHHSCCEE
T ss_pred HHHHHHHHCCCCCEE
T ss_conf 999999861898569
No 31
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Clostridium leptum dsm 753}
Probab=70.77 E-value=3.2 Score=19.78 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=23.0
Q ss_pred CEEECCEEECCCCCEECCCCEEEEEECCCH
Q ss_conf 904998993286758048988999705601
Q gi|254780610|r 50 FISINGMVSKNPNRKVVPGDSFLITVPAAQ 79 (340)
Q Consensus 50 ~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~ 79 (340)
...|||+.+ ..++.|+.||.|.+...+..
T Consensus 43 ~akING~~v-~l~~~L~~GD~VeIiT~k~~ 71 (78)
T 3hvz_A 43 GAKVDGRIV-PIDYKVKTGEIIDVLTTKEL 71 (78)
T ss_dssp EEEETTEEE-CTTCBCCTTCBEEEEECC--
T ss_pred EEEECCEEC-CCCCCCCCCCEEEEEECCCC
T ss_conf 269999999-99887699999999978863
No 32
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=64.97 E-value=4.5 Score=18.92 Aligned_cols=28 Identities=11% Similarity=0.049 Sum_probs=22.2
Q ss_pred CEEECCEEECCCCCEECCCCEEEEEECCC
Q ss_conf 90499899328675804898899970560
Q gi|254780610|r 50 FISINGMVSKNPNRKVVPGDSFLITVPAA 78 (340)
Q Consensus 50 ~V~vnG~~~~~~~~~l~~gd~I~i~~~~~ 78 (340)
...|||+.+ ..++.|+.||.|.+...+.
T Consensus 38 ~A~ING~~~-~L~~~L~~GD~VeIiT~k~ 65 (73)
T 2kmm_A 38 GAKVNHKLV-PLSYVLNSGDQVEVLSSKS 65 (73)
T ss_dssp EEEETTEEC-CTTCBCCSSSBEEEEECCC
T ss_pred EEEECCEEC-CCCCCCCCCCEEEEEECCC
T ss_conf 678899999-9888858999999997887
No 33
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=55.40 E-value=7.7 Score=17.52 Aligned_cols=62 Identities=16% Similarity=0.110 Sum_probs=31.6
Q ss_pred EEEECHHHCCCCHHHHHHHHCCCCCCHHHHHHHH-HCCC------EEECCEEEC---CCCCEECCCCEEEEEEC
Q ss_conf 9995711368757899998717688989999999-8599------049989932---86758048988999705
Q gi|254780610|r 13 ISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILI-LNGF------ISINGMVSK---NPNRKVVPGDSFLITVP 76 (340)
Q Consensus 13 ~~~V~~~~~g~RLD~~L~~~l~~~~sR~~i~kli-~~G~------V~vnG~~~~---~~~~~l~~gd~I~i~~~ 76 (340)
...+..+..+.++...| ..|...++... +.++ +.|. |.|||..++ ..++.|+.||.|.+..+
T Consensus 33 ev~l~~~~~~~TV~eLl-~~L~~~~~~~~-~~l~~~~g~lr~~i~VlVNg~di~~l~g~dt~LkdGDeV~~ip~ 104 (114)
T 1wgk_A 33 QVALPGQEEPWDIRNLL-VWIKKNLLKER-PELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIST 104 (114)
T ss_dssp EEEECCCSSCCBHHHHH-HHHTTTTCCSC-HHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSSEEEEEEEC
T ss_pred EEECCCCCCCCCHHHHH-HHHHHHCCCHH-HHHHHCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCEEEEECC
T ss_conf 77636888864599999-99999764026-78753378766556999889343405787646699799999788
No 34
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PFU-562899-001, PSI, protein structure initiative; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=48.43 E-value=8.3 Score=17.35 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=20.7
Q ss_pred CEEECCEEECCCCCEECCCCEEEEEEC
Q ss_conf 904998993286758048988999705
Q gi|254780610|r 50 FISINGMVSKNPNRKVVPGDSFLITVP 76 (340)
Q Consensus 50 ~V~vnG~~~~~~~~~l~~gd~I~i~~~ 76 (340)
.|.|||+.+. .++.|+.||+|.+..|
T Consensus 69 ~v~vN~~~~~-~d~~L~dgDeVai~PP 94 (98)
T 1vjk_A 69 NIAVNGRYVS-WDEELKDGDVVGVFPP 94 (98)
T ss_dssp EEEETTBCCC-TTCBCCTTCEEEEESC
T ss_pred EEEECCEECC-CCCCCCCCCEEEEECC
T ss_conf 9998889969-9978099899999798
No 35
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative; 2.10A {Haemophilus influenzae 86-028np} SCOP: d.15.3.4
Probab=48.37 E-value=3.3 Score=19.75 Aligned_cols=33 Identities=18% Similarity=0.077 Sum_probs=24.9
Q ss_pred HCCCEEECCEEECCCCCEECCCCEEEEEECCCHH
Q ss_conf 8599049989932867580489889997056011
Q gi|254780610|r 47 LNGFISINGMVSKNPNRKVVPGDSFLITVPAAQK 80 (340)
Q Consensus 47 ~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~~~~ 80 (340)
....|-|.|+++ ..++.|+.||+|.++.|-...
T Consensus 57 ~~~~vGIfGk~v-~ld~~L~~GDRVEIYRPL~~D 89 (97)
T 2hj1_A 57 STNKIGIFSRPI-KLTDVLKEGDRIEIYRPLLAD 89 (97)
T ss_dssp TTSEEEEEECSC-CTTCBCCTTCEEEECCCCC--
T ss_pred CCCCEEEECCCC-CCCCCCCCCCEEEEECCCCCC
T ss_conf 105266689285-988817899999994565659
No 36
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=46.69 E-value=13 Score=16.12 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=21.8
Q ss_pred CEEECCEEECCCCCEECCCCEEEEEEC
Q ss_conf 904998993286758048988999705
Q gi|254780610|r 50 FISINGMVSKNPNRKVVPGDSFLITVP 76 (340)
Q Consensus 50 ~V~vnG~~~~~~~~~l~~gd~I~i~~~ 76 (340)
.|.||++.+. .++.|..||+|.+..|
T Consensus 48 ~vavN~~~~~-~~~~l~dgDeVa~~PP 73 (77)
T 2q5w_D 48 QVAVNEEFVQ-KSDFIQPNDTVALIPP 73 (77)
T ss_dssp EEEETTEEEC-TTSEECTTCEEEEECS
T ss_pred EEEECCEECC-CCCEECCCCEEEEECC
T ss_conf 9998997979-9953099799999799
No 37
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Probab=41.58 E-value=16 Score=15.64 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=5.9
Q ss_pred CCCCCCEEEEECCHHHH
Q ss_conf 33232405721203578
Q gi|254780610|r 149 DKDTTGVMVVAKNDLAH 165 (340)
Q Consensus 149 Dr~TSGlll~Ak~~~a~ 165 (340)
|-+|||-||++-.++.+
T Consensus 319 d~qTsGgLLi~v~~e~a 335 (394)
T 3fd5_A 319 CPETSGGLLICLPREQA 335 (394)
T ss_dssp CCCSSCCEEEEECHHHH
T ss_pred CHHHCCCEEEEECHHHH
T ss_conf 60433838999837999
No 38
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown function; NMR {Pyrococcus furiosus dsm 3638} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=36.87 E-value=8.9 Score=17.15 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=30.9
Q ss_pred HCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEEE
Q ss_conf 36875789999871768898999999985990499899328675804898899970
Q gi|254780610|r 20 TAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLITV 75 (340)
Q Consensus 20 ~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~~ 75 (340)
+.+.++..+| +.| +++... =.|.+||+.+. .++.|+.||+|.+..
T Consensus 28 ~~~~tv~dlL-~~L--~~~~~~-------v~VavNg~~v~-~d~~l~dgDeV~i~p 72 (77)
T 1rws_A 28 REGMKVRDIL-RAV--GFNTES-------AIAKVNGKVVL-EDDEVKDGDFVEVIP 72 (77)
T ss_dssp CSSCCHHHHH-HTT--TCSSCS-------SCEEETTEEEC-SSSCCCSSCCCBCSC
T ss_pred CCCCCHHHHH-HHC--CCCCCC-------EEEEECCEECC-CCCCCCCCCEEEEEE
T ss_conf 9989799999-886--999774-------89998999968-984879999999990
No 39
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=36.02 E-value=9.9 Score=16.87 Aligned_cols=27 Identities=11% Similarity=0.135 Sum_probs=20.3
Q ss_pred EEECCEEEC---CCCCEECCCCEEEEEECC
Q ss_conf 049989932---867580489889997056
Q gi|254780610|r 51 ISINGMVSK---NPNRKVVPGDSFLITVPA 77 (340)
Q Consensus 51 V~vnG~~~~---~~~~~l~~gd~I~i~~~~ 77 (340)
|.|||+.++ ..++.|+.||.|.+..+-
T Consensus 70 VlVNg~~i~~l~gldt~L~dgDeV~~~p~v 99 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEFISTL 99 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEEEECC
T ss_pred EEECCEECCCCCCCCCCCCCCCEEEEECCC
T ss_conf 999992843688866383996999996888
No 40
>1pqh_A Aspartate 1-decarboxylase; pyruvoyl dependent decarboxylase, protein SELF-processing, lyase; 1.29A {Escherichia coli} SCOP: b.52.2.1 PDB: 1pqf_A 1pt1_A 1pt0_A 1pyq_A 1ppy_A 1pqe_A 1pyu_B 1aw8_B 1aw8_E 1pyu_A 1aw8_A
Probab=35.25 E-value=7.8 Score=17.51 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=8.0
Q ss_pred CCCCCEEEEEECCCH
Q ss_conf 014402789962401
Q gi|254780610|r 93 LYEDDDIIVINKPAG 107 (340)
Q Consensus 93 lyED~~llvinKPaG 107 (340)
+.+.+.+-|+|.-.|
T Consensus 55 i~~~E~V~V~Nv~NG 69 (143)
T 1pqh_A 55 ILENEAIDIWNVTNG 69 (143)
T ss_dssp CCTTCEEEEEETTTC
T ss_pred CCCCCEEEEEECCCC
T ss_conf 988988999999999
No 41
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=31.93 E-value=18 Score=15.27 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=20.2
Q ss_pred CEEECCEEECC---CCCEECCCCEEEEEEC
Q ss_conf 90499899328---6758048988999705
Q gi|254780610|r 50 FISINGMVSKN---PNRKVVPGDSFLITVP 76 (340)
Q Consensus 50 ~V~vnG~~~~~---~~~~l~~gd~I~i~~~ 76 (340)
.|.|||+.++. .++.|..||+|.+..|
T Consensus 57 ~v~vNg~~i~~~~~~~t~l~dgDeV~i~Pp 86 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEEECC
T ss_pred EEEECCEEECCCCCCCCCCCCCCEEEEECC
T ss_conf 998858870444565653799999999788
No 42
>1xqu_A HIT family hydrolase; protein structure initiative, PSI, southeast collaboratory for structural genomics, secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=27.70 E-value=14 Score=16.07 Aligned_cols=20 Identities=35% Similarity=0.689 Sum_probs=14.2
Q ss_pred HHHHHHCCCCCEEEEEECCC
Q ss_conf 22222101440278996240
Q gi|254780610|r 87 NIPLDILYEDDDIIVINKPA 106 (340)
Q Consensus 87 ~~~~~IlyED~~llvinKPa 106 (340)
..+-.||||||+++++.=..
T Consensus 46 e~p~~iVyEde~~vaflD~~ 65 (147)
T 1xqu_A 46 ELPSTIYYEDERVIAIKDIN 65 (147)
T ss_dssp SSCBCEEEECSSEEEEECSS
T ss_pred CCCCCEEEECCCEEEEEECC
T ss_conf 88756798689789998179
No 43
>2c45_A Aspartate 1-decarboxylase precursor; double-PSI beta barrel, lyase, zymogen, pantothenate biosynthesis, pyruvate; 2.99A {Mycobacterium tuberculosis}
Probab=27.55 E-value=20 Score=15.02 Aligned_cols=21 Identities=43% Similarity=0.746 Sum_probs=9.2
Q ss_pred CCEEECCEEECCCCCEECCCCEEEE
Q ss_conf 9904998993286758048988999
Q gi|254780610|r 49 GFISINGMVSKNPNRKVVPGDSFLI 73 (340)
Q Consensus 49 G~V~vnG~~~~~~~~~l~~gd~I~i 73 (340)
|.|.+||.- .+...+||.|.+
T Consensus 67 g~I~lNGaA----A~~~~~GD~vII 87 (139)
T 2c45_A 67 GVIGINGAA----AHLVHPGDLVIL 87 (139)
T ss_dssp TCEEEESST----TTTSCTTCEEEE
T ss_pred CEEEECCHH----HHCCCCCCEEEE
T ss_conf 527636678----744699999999
No 44
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=27.27 E-value=28 Score=14.23 Aligned_cols=48 Identities=17% Similarity=0.134 Sum_probs=29.5
Q ss_pred HHHHHHCCCCCCHHHHHHHHHCCC------EEECCEEECC---CCCEECCCCEEEEEEC
Q ss_conf 999987176889899999998599------0499899328---6758048988999705
Q gi|254780610|r 27 RWLATSLKEQFSRSYVKILILNGF------ISINGMVSKN---PNRKVVPGDSFLITVP 76 (340)
Q Consensus 27 ~~L~~~l~~~~sR~~i~kli~~G~------V~vnG~~~~~---~~~~l~~gd~I~i~~~ 76 (340)
.+|.++++.. +..+.-..+.|. |.|||+-++- .++.|+.||.|.+..+
T Consensus 39 ~~L~~~~~~~--~~~~~~~~~~~~lr~~i~v~vN~~di~~l~gl~t~l~~gD~V~i~p~ 95 (99)
T 2qjl_A 39 DHIVSTMINN--PNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTST 95 (99)
T ss_dssp HHHHHHTCSS--GGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEEC
T ss_pred HHHHHHCCCC--HHHHHHHHCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCEEEEECC
T ss_conf 9999875532--25554330135644527999899263505786748699799999688
No 45
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} PDB: 3llj_A* 1rzy_A* 3o1z_A 3o1x_A* 1kpe_B* 1kpb_A* 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=27.24 E-value=14 Score=16.01 Aligned_cols=16 Identities=38% Similarity=0.854 Sum_probs=12.8
Q ss_pred HHHHHCCCCCEEEEEE
Q ss_conf 2222101440278996
Q gi|254780610|r 88 IPLDILYEDDDIIVIN 103 (340)
Q Consensus 88 ~~~~IlyED~~llvin 103 (340)
+|-.||||||+++++.
T Consensus 27 ~pa~iVyEde~~~af~ 42 (126)
T 3o1c_A 27 IPAKIIFEDDQALAFH 42 (126)
T ss_dssp SCCCEEEECSSEEEEE
T ss_pred CCCCEEEECCCEEEEE
T ss_conf 7768898789699997
No 46
>3lb5_A HIT-like protein involved in cell-cycle regulation; niaid, seattle structural genomics center for infectious disease, ssgcid; 1.90A {Bartonella henselae}
Probab=26.74 E-value=14 Score=15.95 Aligned_cols=19 Identities=42% Similarity=0.637 Sum_probs=14.2
Q ss_pred HHHHHHCCCCCEEEEEECC
Q ss_conf 2222210144027899624
Q gi|254780610|r 87 NIPLDILYEDDDIIVINKP 105 (340)
Q Consensus 87 ~~~~~IlyED~~llvinKP 105 (340)
.+|-.|||||++++++.-.
T Consensus 39 e~p~~ivyEde~~~afld~ 57 (161)
T 3lb5_A 39 EIPSVRVYEDDDVIAFMDI 57 (161)
T ss_dssp SSCCCEEEECSSEEEEECS
T ss_pred CCCCCEEEECCCEEEEECC
T ss_conf 8888879879979999788
No 47
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=25.58 E-value=22 Score=14.79 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=14.3
Q ss_pred CCCEEECCEEECCCCCEECCCCEEEEE
Q ss_conf 599049989932867580489889997
Q gi|254780610|r 48 NGFISINGMVSKNPNRKVVPGDSFLIT 74 (340)
Q Consensus 48 ~G~V~vnG~~~~~~~~~l~~gd~I~i~ 74 (340)
+|.|.+||-- .+.+++||.|.+.
T Consensus 42 Sg~I~lNGaA----Ar~~~~GD~vII~ 64 (96)
T 1vc3_B 42 SGVIGINGAA----AHLVKPGDLVILV 64 (96)
T ss_dssp TTCEEEEGGG----GGTCCTTCEEEEE
T ss_pred CCEEEECCHH----HHCCCCCCEEEEE
T ss_conf 7648746788----7347999999999
No 48
>1uhe_A Aspartate 1-decarboxylase alpha chain; double-PSI beta barrel, lyase; HET: NSN; 1.55A {Helicobacter pylori} SCOP: b.52.2.1 PDB: 1uhd_A
Probab=25.33 E-value=20 Score=15.08 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=22.6
Q ss_pred CHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEE
Q ss_conf 7113687578999987176889899999998599049989932867580489889997
Q gi|254780610|r 17 SDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLIT 74 (340)
Q Consensus 17 ~~~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~ 74 (340)
..-..|.|+.+|.. + + . ++|.|.+||-- .+...+||.|.+.
T Consensus 22 ~Nv~NG~Rf~TYvI---~-g-~--------~sg~I~lNGaA----Ar~~~~GD~vII~ 62 (97)
T 1uhe_A 22 VDVNNGERFSTYVI---L-G-K--------KRGEICVNGAA----ARKVAIGDVVIIL 62 (97)
T ss_dssp EETTTCCEEEEECE---E-E-C--------STTCEEEEGGG----GGGCCTTCEEEEE
T ss_pred EECCCCCEEEEEEE---E-C-C--------CCCEEEECCHH----HHCCCCCCEEEEE
T ss_conf 99989958898998---3-2-7--------88879878789----8347999999999
No 49
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, transcription; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis H37RV} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=24.13 E-value=32 Score=13.88 Aligned_cols=12 Identities=8% Similarity=0.102 Sum_probs=5.1
Q ss_pred EEEEEEEEECCC
Q ss_conf 334454320243
Q gi|254780610|r 182 KRAYYAMVWGIP 193 (340)
Q Consensus 182 ~K~Y~Aiv~G~~ 193 (340)
..-|.+|..+.+
T Consensus 248 ~~L~~~il~~~~ 259 (388)
T 2ff4_A 248 RALNERILRQQP 259 (388)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHCCCC
T ss_conf 999999845898
No 50
>3oug_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta barrel; HET: MSE; 1.55A {Francisella tularensis subsp}
Probab=23.76 E-value=22 Score=14.78 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=5.6
Q ss_pred CCCCEEEEEECCCH
Q ss_conf 14402789962401
Q gi|254780610|r 94 YEDDDIIVINKPAG 107 (340)
Q Consensus 94 yED~~llvinKPaG 107 (340)
.+.+.+.|+|.-.|
T Consensus 42 ~~~E~V~V~N~~NG 55 (114)
T 3oug_A 42 IENEKVQVVNLNNG 55 (114)
T ss_dssp CTTBEEEEEETTTC
T ss_pred CCCCEEEEEECCCC
T ss_conf 88988999999999
No 51
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis H37RV} PDB: 3dwm_A
Probab=23.68 E-value=32 Score=13.83 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=20.3
Q ss_pred CEEECCEEEC---CCCCEECCCCEEEEEEC
Q ss_conf 9049989932---86758048988999705
Q gi|254780610|r 50 FISINGMVSK---NPNRKVVPGDSFLITVP 76 (340)
Q Consensus 50 ~V~vnG~~~~---~~~~~l~~gd~I~i~~~ 76 (340)
.|.|||+.+. ..++.|..||+|.+..+
T Consensus 60 ~v~vn~~~i~~~~~~~~~l~~gdeV~i~Pp 89 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTILPA 89 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEEEEC
T ss_pred EEEECCHHHCCCCCCCCCCCCCCEEEEECC
T ss_conf 999887110033575664899999999688
No 52
>2qxx_A DCTP deaminase, deoxycytidine triphosphate deaminase; distorted beta barrel, hydrolase, nucleotide metabolism; HET: TTP 1PE; 2.00A {Mycobacterium tuberculosis H37RV} PDB: 2qlp_A*
Probab=23.15 E-value=33 Score=13.80 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHCCCEEEC---CEEECCCCCEECCCCEEEEEE
Q ss_conf 898999999985990499---899328675804898899970
Q gi|254780610|r 37 FSRSYVKILILNGFISIN---GMVSKNPNRKVVPGDSFLITV 75 (340)
Q Consensus 37 ~sR~~i~kli~~G~V~vn---G~~~~~~~~~l~~gd~I~i~~ 75 (340)
+|-..|+++|++|.+.++ -+.+...++-|+-|+.+.++.
T Consensus 3 Lsd~~I~~~i~~g~i~I~Pf~~~~iqpas~DLrLg~~~~v~~ 44 (190)
T 2qxx_A 3 LSDRDLRAEISSGRLGIDPFDDTLVQPSSIDVRLDCLFRVFN 44 (190)
T ss_dssp CCHHHHHHHHHTTSSEEESCCGGGEETTEEEEEBCSCEEECC
T ss_pred CCHHHHHHHHHCCCEEECCCCHHHCCCCCEEEEECCEEEEEE
T ss_conf 688999999985992685899788387617378246389950
No 53
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} PDB: 3omf_A*
Probab=22.39 E-value=19 Score=15.16 Aligned_cols=16 Identities=50% Similarity=0.951 Sum_probs=12.4
Q ss_pred HHHHHCCCCCEEEEEE
Q ss_conf 2222101440278996
Q gi|254780610|r 88 IPLDILYEDDDIIVIN 103 (340)
Q Consensus 88 ~~~~IlyED~~llvin 103 (340)
.+-.|||||++++|+-
T Consensus 19 ~p~~iv~e~~~~~af~ 34 (117)
T 3oj7_A 19 IPSTIVYEDDEIFAFK 34 (117)
T ss_dssp SCCCEEEECSSEEEEE
T ss_pred CCCCEEEECCCEEEEE
T ss_conf 8756797689689997
No 54
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} PDB: 3n1t_A*
Probab=21.54 E-value=23 Score=14.75 Aligned_cols=16 Identities=44% Similarity=0.808 Sum_probs=12.8
Q ss_pred HHHHHCCCCCEEEEEE
Q ss_conf 2222101440278996
Q gi|254780610|r 88 IPLDILYEDDDIIVIN 103 (340)
Q Consensus 88 ~~~~IlyED~~llvin 103 (340)
.|-.++|||++++|+.
T Consensus 15 ~p~~~Vyed~~~~~f~ 30 (119)
T 3n1s_A 15 IPSDIVYQDDLVTAFR 30 (119)
T ss_dssp SCCCEEEECSSEEEEE
T ss_pred CCCCEEEECCCEEEEE
T ss_conf 8778897799799998
No 55
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=21.42 E-value=36 Score=13.55 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=20.5
Q ss_pred EEECCEEECC---CCCEECCCCEEEEEECC
Q ss_conf 0499899328---67580489889997056
Q gi|254780610|r 51 ISINGMVSKN---PNRKVVPGDSFLITVPA 77 (340)
Q Consensus 51 V~vnG~~~~~---~~~~l~~gd~I~i~~~~ 77 (340)
|.|||+.++. .++.|..||+|.+..|-
T Consensus 55 V~VNge~I~~~~g~dt~L~dgDEVailPPV 84 (168)
T 1v8c_A 55 VFLEGRDVRYLQGLSTPLSPGATLDLFPPV 84 (168)
T ss_dssp EEETTEEGGGTTGGGCBCCTTCEEEEECSC
T ss_pred EEECCEEECCCCCCCCCCCCCCEEEEECCC
T ss_conf 998476631456888556999999997998
No 56
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=20.71 E-value=31 Score=13.95 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=34.3
Q ss_pred HCCCEEECCEEECCCCCEECCCCEEEEEECC---CHHCCHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 8599049989932867580489889997056---0111102332222210144027899624
Q gi|254780610|r 47 LNGFISINGMVSKNPNRKVVPGDSFLITVPA---AQKLNIAQENIPLDILYEDDDIIVINKP 105 (340)
Q Consensus 47 ~~G~V~vnG~~~~~~~~~l~~gd~I~i~~~~---~~~~~~~~~~~~~~IlyED~~llvinKP 105 (340)
.-|.+.|+|+.-+-.+-.|.++....+...+ .....+.+.++. +++-++-++|+|-.=
T Consensus 10 s~G~i~v~G~~~~~~D~~v~P~g~~~w~~~~~G~~~~~~l~~~~l~-~ll~~~peilliGtG 70 (122)
T 2ab1_A 10 SWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVK-EVVEKGVQTLVIGRG 70 (122)
T ss_dssp ETTEEEETTCSCEESEEEEETTEEEEECHHHHTCCSSSCCCHHHHH-HHHTTCCSEEEEEEC
T ss_pred CCCEEEEECEEEECCCEEEECCCCEECCCCCCCCCCCCCCCHHHHH-HHHCCCCCEEEEECC
T ss_conf 1653898060665375899489766345566776565654989999-986059999999289
No 57
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, PSI, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus dsm 3638} SCOP: b.122.1.6
Probab=20.46 E-value=37 Score=13.43 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=27.6
Q ss_pred HHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEE
Q ss_conf 99999998599049989932867580489889997
Q gi|254780610|r 40 SYVKILILNGFISINGMVSKNPNRKVVPGDSFLIT 74 (340)
Q Consensus 40 ~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~ 74 (340)
..+-.+|++|.=+|-|+.....-..++.||.|.+.
T Consensus 10 ~~~f~~I~~G~KtiE~Rl~d~k~~~ik~GD~I~F~ 44 (113)
T 1xne_A 10 DEYLEMVKSGKKRIEVRVAYPQLKDIKRGDKIIFN 44 (113)
T ss_dssp HHHHHHHHHTCCCEEECCCTTTTTTCCTTCEEEET
T ss_pred CCHHHHHHCCCCEEEEEECHHHHHHCCCCCEEEEE
T ss_conf 64589997699779998251778608999999990
Done!