HHSEARCH alignment of GI: 254780610 and SCOP domain: d1c06a_

Alignment

Probab=98.15  E-value=1.9e-06  Score=55.55  Aligned_cols=53  Identities=23%  Similarity=0.386  Sum_probs=46.9

Q ss_pred             CCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEE
Q ss_conf             687578999987176889899999998599049989932867580489889997
Q gi|254780610|r   21 AEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLIT   74 (340)
Q Consensus        21 ~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~   74 (340)
                      -+.|||..+-+. .-..|+.++++++..|.|.|||+++.-|++.+++||.|.+.
T Consensus        49 lE~RlD~vv~r~-gfa~t~~~arQ~v~Hghi~vNgk~v~iPSy~vk~GDvIsvk  101 (159)
T d1c06a_          49 LESRLDNLVYRL-GLARTRRQARQLVTHGHILVDGSRVNIPSYRVKPGQTIAVR  101 (159)
T ss_dssp             HHHCHHHHHHHH-TSSSSHHHHHHHHHTSCEEETTEECCCSSCCCCSSCEEEEC
T ss_pred             HHHHHHHHHCCC-CCCCCHHHHHHHHHHCCEECCCEEEEECCEEECCCCEEEEC
T ss_conf             998754551057-63278888998887356371335998512152278488612

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: Ribosomal protein S4
domain: Ribosomal protein S4
species: Bacillus stearothermophilus [TaxId: 1422]