HHSEARCH alignment of GI: 254780610 and SCOP domain: d1k8wa5

Alignment

Probab=97.40  E-value=8e-05  Score=45.79  Aligned_cols=70  Identities=19%  Similarity=0.400  Sum_probs=48.5

Q ss_pred             CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r   97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG  176 (340)
Q Consensus        97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~  176 (340)
                      +.+++||||+|+.+|        -+++.+...+.        ..+.|-...||--.||+|+++-+...  .+...|..  
T Consensus         4 ~G~l~v~KP~g~tS~--------~vv~~~k~~l~--------~kKvGh~GTLDP~AsGvL~i~ig~aT--K~~~~~~~--   63 (242)
T d1k8wa5           4 NGVLLLDKPQGMSSN--------DALQKVKRIYN--------ANRAGHTGALDPLATGMLPICLGEAT--KFSQYLLD--   63 (242)
T ss_dssp             CEEEEEEECTTCCHH--------HHHHHHHHHTT--------CSCEEESSCCCTTCEEEEEEEEGGGG--GGTHHHHT--
T ss_pred             CEEEEEECCCCCCHH--------HHHHHHHHHHC--------CCCCCCCCCCCCCCCCEEEEEECHHH--HHHHHHHH--
T ss_conf             679999669989989--------99999999828--------77578477479866110799976334--44355432--


Q ss_pred             CCCCEEEEEEEEEE
Q ss_conf             13221334454320
Q gi|254780610|r  177 KSTRLKRAYYAMVW  190 (340)
Q Consensus       177 ~~~~v~K~Y~Aiv~  190 (340)
                          -.|+|.|.+.
T Consensus        64 ----~~K~Y~~~i~   73 (242)
T d1k8wa5          64 ----SDKRYRVIAR   73 (242)
T ss_dssp             ----SCEEEEEEEE
T ss_pred             ----HHHEEEEEEE
T ss_conf             ----1131159999

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase II TruB
domain: Pseudouridine synthase II TruB
species: Escherichia coli [TaxId: 562]