HHSEARCH alignment of GI: 254780610 and SCOP domain: d1p9ka_

Alignment

Probab=98.34  E-value=4.3e-08  Score=65.32  Aligned_cols=67  Identities=19%  Similarity=0.200  Sum_probs=55.7

Q ss_pred             HHCCCEEEEEECHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCEEECCEEECCCCCEECCCCEEEEE
Q ss_conf             101624999957113687578999987176889899999998599049989932867580489889997
Q gi|254780610|r    6 DNCSSIKISLLSDSTAEGRIDRWLATSLKEQFSRSYVKILILNGFISINGMVSKNPNRKVVPGDSFLIT   74 (340)
Q Consensus         6 ~~~~~~~~~~V~~~~~g~RLD~~L~~~l~~~~sR~~i~kli~~G~V~vnG~~~~~~~~~l~~gd~I~i~   74 (340)
                      ...+.|..+.+. .+...|||+||...-. .-||++++++|++|+|+|||++++++++.+.+||.|.+.
T Consensus         5 ~~~~~m~~~~~~-~~~~irL~k~L~~~gl-~~Sr~eAk~lI~~G~V~VNG~~~~~p~~~V~~~d~I~vd   71 (79)
T d1p9ka_           5 HRMSNMATFSLG-KHPHVELCDLLKLEGW-SESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFA   71 (79)
T ss_dssp             CSSCCCCEEECC-SCSCCCHHHHHHHHTS-CSSSSTTSHHHHHHHHEETTBCCCCSSCCCCSSEEEEET
T ss_pred             CCCCCCCEEECC-CCCCEEHHHHHHHCCC-CCCHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEC
T ss_conf             123587207869-9982889999987788-468999999999398603998936456349999999999

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-L RNA-binding motif
superfamily: Alpha-L RNA-binding motif
family: YbcJ-like
domain: Hypothetical protein YbcJ
species: Escherichia coli [TaxId: 562]