HHSEARCH alignment of GI: 254780610 and SCOP domain: d1r3ea2

Alignment
>d1r3ea2 d.265.1.2 (A:10-237) Pseudouridine synthase II TruB {Thermotoga maritima [TaxId: 2336]}
Probab=97.09  E-value=0.00016  Score=44.07  Aligned_cols=70  Identities=24%  Similarity=0.415  Sum_probs=47.5

Q ss_pred             CEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHC
Q ss_conf             02789962401110456787542100222222102443344443643244443323240572120357888899999721
Q gi|254780610|r   97 DDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSEQFVDHG  176 (340)
Q Consensus        97 ~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~~f~~~~  176 (340)
                      +.++.||||.|+.+|        -+++.+...+..        .+.|-..+||-..||||+++-+...  .+...|.   
T Consensus         3 ~G~l~i~Kp~g~tS~--------~~v~~vk~~l~~--------~KvGh~GTLDP~AsGvL~i~ig~~t--kl~~~~~---   61 (228)
T d1r3ea2           3 HGILVAYKPKGPTSH--------DVVDEVRKKLKT--------RKVGHGGTLDPFACGVLIIGVNQGT--RILEFYK---   61 (228)
T ss_dssp             CEEEEEEECSSSCHH--------HHHHHHHHHTTC--------SCEEESSCCCTTCEEEEEEEEGGGG--GGGGGGT---
T ss_pred             CEEEEEECCCCCCHH--------HHHHHHHHHHCC--------CCCCCCCCCCCCCEEEEEEEECCCC--CCHHHHH---
T ss_conf             649999679988989--------999999998577--------7567573369745123799871111--3204552---


Q ss_pred             CCCCEEEEEEEEEE
Q ss_conf             13221334454320
Q gi|254780610|r  177 KSTRLKRAYYAMVW  190 (340)
Q Consensus       177 ~~~~v~K~Y~Aiv~  190 (340)
                         .-.|+|.|.+.
T Consensus        62 ---~~~K~Y~~~~~   72 (228)
T d1r3ea2          62 ---DLKKVYWVKMR   72 (228)
T ss_dssp             ---TSCEEEEEEEE
T ss_pred             ---CCCCEEEEEEE
T ss_conf             ---06523899999


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase II TruB
domain: Pseudouridine synthase II TruB
species: Thermotoga maritima [TaxId: 2336]