HHSEARCH alignment of GI: 254780610 and SCOP domain: d1v9ka_

Alignment
>d1v9ka_ d.265.1.3 (A:) Ribosomal large subunit pseudouridine synthase C, RluC {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=428.79  Aligned_cols=224  Identities=33%  Similarity=0.487  Sum_probs=185.7

Q ss_pred             HHCCCCCEEEEEECCCHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHH
Q ss_conf             21014402789962401110456787542100222222102443344443643244443323240572120357888899
Q gi|254780610|r   91 DILYEDDDIIVINKPAGLVVHPAPGNWTGTLVNALLYHCHNNLSSINGVKRPGIVHRLDKDTTGVMVVAKNDLAHQKLSE  170 (340)
Q Consensus        91 ~IlyED~~llvinKPaGl~vhp~~~~~~~tl~~~l~~~~~~~~~~~~~~~~~~lVHRLDr~TSGlll~Ak~~~a~~~l~~  170 (340)
                      .||||||+|+|||||+||+|||+++...++ ++.+..+..       ....+++||||||+||||||||||+.+++.|++
T Consensus         2 ~IlyeD~~ilvvnKP~gl~~h~~~~~~~~~-~~~l~~~~~-------~~~~~~~vHRLD~~TSGlll~Ak~~~~~~~l~~   73 (227)
T d1v9ka_           2 VIMYEDDHILVLNKPSGTAVHGGSGLSFGV-IEGLRALRP-------EARFLELVHRLDRDTSGVLLVAKKRSALRSLHE   73 (227)
T ss_dssp             CEEEECSSEEEEEECTTSCSSCCSSSBCCH-HHHHHHHST-------TCSCCEESSCCCTTCEEEEEEESSHHHHHHHHH
T ss_pred             EEEEECCCEEEEECCCCCCCCCCCCCCCHH-HHHHHHHCC-------CCCCCCEEEECCCEEEEEEEEECCHHHHHHHHH
T ss_conf             799967999999999998648998995359-999998677-------876531563224202004665155699999999


Q ss_pred             HHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCEEEE
Q ss_conf             99972113221334454320243323321100134344433221234445555530000122210112566775001234
Q gi|254780610|r  171 QFVDHGKSTRLKRAYYAMVWGIPLPDSGIINAPLGRCKSNRLRRAVKGIDDKTADSAITHYQTIEIYNKNSNFAVSLLKC  250 (340)
Q Consensus       171 ~f~~~~~~~~v~K~Y~Aiv~G~~~~~~g~i~~~l~~~~~~~~~~~~~~~~~~~~k~a~T~~~~l~~~~~~~~~~~slv~~  250 (340)
                      +|+    ++.+.|+|+|+|.|.++...++++.|+..+......+.+  .....|++|.|.|++++.+.     .+||++|
T Consensus        74 ~f~----~~~v~K~Y~a~~~G~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~gk~a~t~~~~l~~~~-----~~slv~~  142 (227)
T d1v9ka_          74 QLR----EKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIV--RVSQEGKPSETRFKVEERYA-----FATLVRC  142 (227)
T ss_dssp             HHH----TTCSEEEEEEEEESCCCTTCCEECCCEEEEECTTSCEEE--EECTTSBCCCEEEEEEEECS-----SEEEEEE
T ss_pred             HHH----CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE--ECCCCCCCCCEEEHHHHHCC-----CCEEEEE
T ss_conf             986----056642011123576312367522330013321102555--20789801205620455258-----7379999


Q ss_pred             EECHHHHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHCEEEEECCCCCCEEEEECCCCHHH
Q ss_conf             43115899999999870978604154477554443345701355440798044321000424688976899984997899
Q gi|254780610|r  251 HLETGRTHQIRVHMAHKGNPLIGDPLYGKGFKTKANIVNNNAKSAILSLARQALHAHSLSFSHPRNNQDMDFQVPIPEDM  330 (340)
Q Consensus       251 ~~~TGRtHQIRvhla~lG~PIvGD~~YG~~~~~~~~~~~~~~~~~~~~~~r~~LHA~~l~f~hP~t~~~~~f~aplP~~~  330 (340)
                      +|+||||||||+||+++|||||||.+||+....      ........+++||+|||++|+|.||.||+.++|+||+|++|
T Consensus       143 ~~~TGRtHQIRvHla~lG~PIvGD~~Yg~~~~~------~~~~~~~~~~~rl~LHa~~L~f~hP~t~~~~~~~aplP~~f  216 (227)
T d1v9ka_         143 SPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFD------RQLTEAGTGLNRLFLHAAALKFTHPGTGEVMRIEAPMDEGL  216 (227)
T ss_dssp             EESSCCTTHHHHHHHHTTCCBTTCTTTSCHHHH------HHHHHTTCCCCSCCEEEEEEEEECTTTCCEEEEECCCCHHH
T ss_pred             EECCCCHHHHHHHHHHCCCEECCCCCCCCCCCC------CCCHHCCCCCCHHHHHCCCCEEECCCCCCEEEEEECCCHHH
T ss_conf             946573478877776459533467603131124------30000146864378871502918899998899992691999


Q ss_pred             HHHHHHHHC
Q ss_conf             999998851
Q gi|254780610|r  331 LTVIRKLNE  339 (340)
Q Consensus       331 ~~~l~~L~~  339 (340)
                      ..+|++|+.
T Consensus       217 ~~~l~~Lk~  225 (227)
T d1v9ka_         217 KRCLQKMRN  225 (227)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999874


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase RsuA/RluD
domain: Ribosomal large subunit pseudouridine synthase C, RluC
species: Escherichia coli [TaxId: 562]